PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA21717

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 402aa MW: 45309.7 Da PI: 9.3733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA21717	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Tp57577_TGAC_v2_mRNA21717 200 HECSICGAEFSSGQALGGHMRRH 222 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.14	116	138	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-10	116	140	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.159	116	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.45E-8	116	138	No hit	No description
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.45E-8	195	222	No hit	No description
Pfam	PF13912	1.1E-12	199	223	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	200	222	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	200	222	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MLVSKDQQQI IKGKRTKRQR LPSPLRLAMP GVSNNSYNEG TSYNDNMYKE NSKGIEFVKI 60 ESCNRSEEEK EEEDMANCLI LLAQGHNRHH DHQNQEHVSN HHDYNNNKSS SNFYFYECKT 120 CNRCFPSFQA LGGHRASHSK PNKANCNNIV TQQKQEVTTS PFVDDHYDPT MNTILSLQAF 180 TAATPITTIT TTATKKSKVH ECSICGAEFS SGQALGGHMR RHRTLVSTST MTTTTTTTPS 240 VSLSIGSRSP KSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXGHMRRHRT LVSTSTMTTT TTTTPSVSLS IGSRSPKSHE AKKPRINYGL 360 KLDLNLPAPE VDQRDQSKFS FQQPRENVIA FSNSSLVDCH Y*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MLVSKDQQQI IKGKRTKRQR LPSPLRLAMP GVSNNSYNEG TSYNDNMYKE NSKGIEFVKI  60
ESCNRSEEEK EEEDMANCLI LLAQGHNRHH DHQNQEHVSN HHDYNNNKSS SNFYFYECKT  120
CNRCFPSFQA LGGHRASHSK PNKANCNNIV TQQKQEVTTS PFVDDHYDPT MNTILSLQAF  180
TAATPITTIT TTATKKSKVH ECSICGAEFS SGQALGGHMR RHRTLVSTST MTTTTTTTPS  240
VSLSIGSRSP KSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXGHMRRHRT LVSTSTMTTT TTTTPSVSLS IGSRSPKSHE AKKPRINYGL  360
KLDLNLPAPE VDQRDQSKFS FQQPRENVIA FSNSSLVDCH Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA21717

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468116.1	1e-105	zinc finger protein ZAT5
TrEMBL	A0A2K3P2Z6	1e-151	A0A2K3P2Z6_TRIPR; Zinc finger protein ZAT5-like
STRING	XP_004515927.1	9e-75	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA21717