PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1898
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 349aa    MW: 39670.4 Da    PI: 7.7299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1898genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-07187206120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C+k+F+r  nL+ H+
  Tp57577_TGAC_v2_mRNA1898 187 FSCPVCSKTFNRYNNLQMHM 206
                               89*****************9 PP
2zf-C2H214.69.2e-05271293123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y C +CgksF  k + ++H +++
  Tp57577_TGAC_v2_mRNA1898 271 YLCRKCGKSFAVKGDWRTHEKNC 293
                               56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-6187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-8187209No hitNo description
PROSITE profilePS5015710.762187214IPR007087Zinc finger, C2H2
PfamPF139128.1E-5187206IPR007087Zinc finger, C2H2
SMARTSM003550.031187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8266291No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5267291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808271291IPR007087Zinc finger, C2H2
SMARTSM0035549271291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTDPQSNFFD EWFNFMLLHP HNHNHNQYSS SSSSSQQTNN MFDIQSHNQP SSSPLTINPP  60
SPPLREALPL INKLSLINHN HQQQQQQQQN EPSNTTIEQE EYKRILERHG DDDVGDESVT  120
FSLQIGLPRM NSSSSSSDLG TRMVSNCIQM AEKEETNMIS ENPLDKLNKG QYWIPTPSQI  180
LIGPTQFSCP VCSKTFNRYN NLQMHMWGHG SQYRKGPDSL KGTQPTAMLR LPCFCCAQGC  240
KHNIDHPRAK PLKDFRTLQT HYKRKHGIKP YLCRKCGKSF AVKGDWRTHE KNCGKIWYCL  300
CGSDFKHKRS LKDHIKAFGY GHGAFGIDCL QEEDEAGSEI EHDGGSSM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1357701e-166BT135770.1 Medicago truncatula clone JCVI-FLMt-15M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510958.10.0zinc finger protein WIP2-like
RefseqXP_004510959.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S2YWC00.0A0A1S2YWC0_CICAR; zinc finger protein WIP2-like
STRINGXP_004510958.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]