PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17016
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 321aa    MW: 36011.1 Da    PI: 7.7213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.31e-08939130
                        NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.lel 30
                               l pGfrFhPt+eel+++yL++++ gk+ ++ 
  Tp57577_TGAC_v2_mRNA17016  9 LLPGFRFHPTEEELISFYLRNNLYGKNpFKS 39
                               579*******************999884333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-8938IPR003441NAC domain
PfamPF023652.8E-71178IPR003441NAC domain
SuperFamilySSF522002.49E-4139185IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.3E-2542182IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010427.32843182IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002552.6E-4144188IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.3E-4345190IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSSSDDLLL PGFRFHPTEE ELISFYLRNN LYGKNPFKSD HPWIYDVFIS FRGEDTRANF  60
VSHLYAALSN AGIYTFLDDK KLKKGKKLGT QLKKAIEGSR ICIIVLSPKY AGSSWCLDEL  120
VHIMECQNTY GQEVIPLFYY VNPSSVRKQT GDFGKVLKLT GNEKMSKARK TEALMSKWRK  180
ALNDGLSTND STASFLPGDN YPSWLAYKCK GSSVHFKVPE NSDCCIRGIA SCVLYSSTLE  240
QPANECLTSV LIINYTKFTI QIYKRDTIMS FNDEDWQGVI STLGFGDSVE IFVAIGHGFT  300
VKETAVYLIY DPSTNAKLEP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A4e-42451858140TIR-NB-LRR type resistance protein RPV1
5ku7_B4e-42451858140TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626930.13e-61TMV resistance protein N
TrEMBLA0A2K3N4A41e-114A0A2K3N4A4_TRIPR; Disease resistance protein (TIR-NBS-LRR class) (Fragment)
STRINGAET014061e-60(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-09NAC domain containing protein 36