PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22415.4 Da PI: 7.6014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.8e-18 | 15 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Tp57577_TGAC_v2_mRNA16181 15 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDEAAILMNG 64 89****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 15 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 15 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.15E-20 | 15 | 73 | No hit | No description |
SuperFamily | SSF54171 | 5.56E-20 | 15 | 73 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-11 | 15 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-38 | 15 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
LKIIYKTLRM VQSNKFRGVR QRQWGSWVSE IRHPLLKRRV WLGTFETAEA AARAYDEAAI 60 LMNGKNAKTN FPIPKDIQTQ EANFLSSNAL SDILNKKLRK CCKKQSPSLT CLRLDTDNSH 120 IGVWQKGAGP HSDSNWIIRV ELGKKLHQEG HDESNYVTSL AESVPNNSTI DDDDAEKNGI 180 DHEEDIVTMQ MIEELLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-17 | 16 | 73 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16181 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145331 | 5e-90 | AC145331.19 Medicago truncatula clone mth2-8o7, complete sequence. | |||
GenBank | AC147471 | 5e-90 | AC147471.14 Medicago truncatula clone mth2-7a7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003588762.1 | 9e-98 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q3E958 | 1e-67 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | G7I702 | 2e-96 | G7I702_MEDTR; Ethylene response factor | ||||
STRING | AES59013 | 3e-97 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 2e-62 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16181 |
Publications ? help Back to Top | |||
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