 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA13487 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
WRKY |
| Protein Properties |
Length: 582aa MW: 62975 Da PI: 7.9349 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA13487 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 96.7 | 1.6e-30 | 309 | 367 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
Tp57577_TGAC_v2_mRNA13487 309 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILVTTYEGTHNHP 367
7*********************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010200 | Biological Process | response to chitin |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 582 aa
Download sequence Send
to blast |
MDKGWGLALD TSSSSSPIPI SSLNSFSRHN TNDNNNNRMF PILGFPVNLT RNTEDSGDRK 60
ITSEVDFFSD RNKPSSSASH EQHQHVKSNI VKKEIISTDE KHVNTGLQLA NTGSDQSVVD 120
DGVSSDAENK RAKTTELAQL QVELQRMNSE NKKLKEMLNH VTGNYTALQM QLVALMQKNH 180
HTENEAVNAK AEEKNQGVGG GMVPRQFLAI TNGTTEVDDQ VSNSSSDERT RSNTPMNNQI 240
EGGTRDHIRN NNGKNGRDDS PESETQGWGP NKAQKILNSS NVNDQANTEA TMRKARVSVR 300
ARSEASMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDKTILVTTY 360
EGTHNHPLPP AAMAMASTTS AAASMLLSGS MSSADGIMTP NLLARAILPC STSMATLSAS 420
APFPTVTLDL TQNSNPNPNP LQFQRPHHAP FQVPNFFQGQ QQPQNFAQAA ASLYNQSKFS 480
GLQLSQEIGS SHLTTQASTQ QQQQQPSLAD SVSXXXXXXX XXXXXXXXXX XAATAAITSD 540
PNFTAVLAAA ISSIIGGGHA NNNNANTNNN SRSSISNFSG N*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU526034 | 0.0 | EU526034.1 Medicago truncatula WRKY transcription factor WRKY100630 mRNA, complete cds. |
| Publications
? help Back to Top |
- Zhou F, et al.
High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
Plant J., 2004. 39(6): p. 920-32
[PMID:15341634] - Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
An extracellular subtilase switch for immune priming in Arabidopsis.
PLoS Pathog., 2013. 9(6): p. e1003445
[PMID:23818851] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Singh V,Roy S,Singh D,Nandi AK
Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
J. Biosci., 2014. 39(1): p. 119-26
[PMID:24499796] - Ali MA,Wieczorek K,Kreil DP,Bohlmann H
The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
PLoS ONE, 2014. 9(7): p. e102360
[PMID:25033038] - Chai J,Liu J,Zhou J,Xing D
Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid.
J. Exp. Bot., 2014. 65(22): p. 6513-28
[PMID:25210078] - Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
Plant Cell, 2014. 26(12): p. 4656-79
[PMID:25549671] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1275-91
[PMID:26304848] - Bakshi M, et al.
WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis.
BMC Plant Biol., 2015. 15: p. 305
[PMID:26718529] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
PLoS Genet., 2016. 12(2): p. e1005833
[PMID:26829043] - Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
PLoS Pathog., 2016. 12(11): p. e1006003
[PMID:27806116] - Li H, et al.
BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis.
Mol Plant, 2017. 10(4): p. 545-559
[PMID:28089951] - Stetter MG,Benz M,Ludewig U
Increased root hair density by loss of WRKY6 in Arabidopsis thaliana.
PeerJ, 2017. 5: p. e2891
[PMID:28149680] - Zhou X, et al.
StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato.
J. Exp. Bot., 2017. 68(5): p. 1265-1281
[PMID:28338870] - Bakshi M, et al.
Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation.
Front Microbiol, 2017. 8: p. 1262
[PMID:28747898] - Zhang Y, et al.
DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6.
Plant Cell Rep., 2018. 37(7): p. 981-992
[PMID:29574486]
|
