PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10067
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 315aa    MW: 35779.6 Da    PI: 8.7894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10067genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51191421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhP+deelv++yL kkv++++  l   + +vd++k+ePwd+p ++  + kewyf+++rd+kyatg r+nrat+sgyWk
  Tp57577_TGAC_v2_mRNA10067  19 LPPGFRFHPRDEELVCDYLMKKVTHSDSFL---MIDVDLNKCEPWDIPDAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWK 99 
                                79**********************999444...789************7666789***************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atgkd+++l+ kg+lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  Tp57577_TGAC_v2_mRNA10067 100 ATGKDRSILR-KGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 142
                                *********9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-607167IPR003441NAC domain
PROSITE profilePS5100556.219166IPR003441NAC domain
PfamPF023652.3E-2720142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
LKQKSFKKMS NISMVEAKLP PGFRFHPRDE ELVCDYLMKK VTHSDSFLMI DVDLNKCEPW  60
DIPDAACVGG KEWYFYTQRD RKYATGLRTN RATASGYWKA TGKDRSILRK GTLVGMRKTL  120
VFYQGRAPKG RKTEWVMHEF RIEGPHGPPK ISSSKEDWVL CRVFYKNREV ATKPSMGSCY  180
DDTGSSSLPA LMDSYISFDQ AQFHTDEFEQ VPCFSIFSQN QTNPIFNHIT TNNMEPKLPI  240
SNNNNATTFG EPPYSLDPLS CDRKVLKAVL SQLSKMERNS INNQILKGSS PSLGEGSSES  300
YLSDVAMPHM WNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-491417312171NO APICAL MERISTEM PROTEIN
1ut4_B3e-491417312171NO APICAL MERISTEM PROTEIN
1ut7_A3e-491417312171NO APICAL MERISTEM PROTEIN
1ut7_B3e-491417312171NO APICAL MERISTEM PROTEIN
3swm_A3e-491417315174NAC domain-containing protein 19
3swm_B3e-491417315174NAC domain-containing protein 19
3swm_C3e-491417315174NAC domain-containing protein 19
3swm_D3e-491417315174NAC domain-containing protein 19
3swp_A3e-491417315174NAC domain-containing protein 19
3swp_B3e-491417315174NAC domain-containing protein 19
3swp_C3e-491417315174NAC domain-containing protein 19
3swp_D3e-491417315174NAC domain-containing protein 19
4dul_A3e-491417312171NAC domain-containing protein 19
4dul_B3e-491417312171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10067
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3434150.0HQ343415.1 Medicago truncatula NAC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595973.10.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-129NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLF6KIF10.0F6KIF1_MEDTR; NAC transcription factor-like protein
STRINGAES662240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-124NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]