PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g19450

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 1115aa MW: 125078 Da PI: 8.5466

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g19450	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.5e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Tp3g19450 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.23E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.73E-5	47	89	No hit	No description
SMART	SM01135	3.1E-58	592	693	IPR033471	DIRP domain
Pfam	PF06584	1.2E-28	592	691	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence Send to blast
MAPSRSKKSK YKKTSRAKGV SPHKDEENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYSVLHGGSD 120 SEQERDEGIE TLRSASKRSR VKPKDHPSMG LEGLSDRLQF RSSGYLPSLK KRHTETVPRA 180 VGKRTPRIPI SYTPEKDTKP VKRGLNQKGG DSDDDMEHEI ALALTAAAQR GGSTKNSHTP 240 NRRANMYSTD KKGERMRADI DLAIAKLHAT EMEDSRCEPS LGSTEADNSG GRNELTHGEG 300 SSAIELQQKG KRYYRRRFGI KEDDTKEACS GTDEAQSLGT LDEKFEPEGN GKSLKFTYKS 360 SRRKSKKSLF TADEDTACDA LQTLADLSLM MPETAPDTES SAQAEEKRAG KAYVSDLKGT 420 DPASLSNLGN SKQRSSVSNV ICNTEAERKS PSSSVNRKKR QKGSPAKIPK DELAASSQVI 480 EPPKNKGIGE GNKPLARGKR SASIRNSHEK KSVKPQDRSS SSNNIVEEDE SAPSTAVTKK 540 QANLPTKVRS RRKIVTEKPL TIDDVKNSEI LEKFSHCISS FQARRWCLFE WFYCAIDYPW 600 FARQEFVEYL DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS GQFLKEEKEK LYAYRDSVRK 660 HYDELNTGMR EGLPMDLARP LNVSQRVISL HPKSREIHDG SVLTVDHCRY RIQFDHPELG 720 VEFVKDTECM PLNPLENMPA SLARHYALSN YHSQNANEEK MHERVKESIP EGYLKLTYET 780 GHPISSPNYN ISNSLKQEKV DIPSSDPQAQ NGVNEAPESR LFNSQPSSIG HIHAREGDVQ 840 ALCELARALD KKELVLRELK CMNNEVVESR KDGHNALKDS ESFKKQYAAV LFQISEINEQ 900 VSLALLGLRQ RNTYQENLPY TSVRHMSESG EPDGQLMYVD NYASDTNGFH VSEIVDSSRI 960 KARKMVYRAI QALASLRKDE NNVVNIEEAI DFVNNELSVD ETEGSSVQQT QAAQDQRLPS 1020 TPNPPSSTHA DDSHVNPLDQ NDLQVPTELV SRCMATLLMI QRCTERQFPP SEVAQVLDSA 1080 VASLQPCCSQ NLPIYTEIQK CMGIIRNQIL ALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence Send to blast

MAPSRSKKSK YKKTSRAKGV SPHKDEENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYSVLHGGSD  120
SEQERDEGIE TLRSASKRSR VKPKDHPSMG LEGLSDRLQF RSSGYLPSLK KRHTETVPRA  180
VGKRTPRIPI SYTPEKDTKP VKRGLNQKGG DSDDDMEHEI ALALTAAAQR GGSTKNSHTP  240
NRRANMYSTD KKGERMRADI DLAIAKLHAT EMEDSRCEPS LGSTEADNSG GRNELTHGEG  300
SSAIELQQKG KRYYRRRFGI KEDDTKEACS GTDEAQSLGT LDEKFEPEGN GKSLKFTYKS  360
SRRKSKKSLF TADEDTACDA LQTLADLSLM MPETAPDTES SAQAEEKRAG KAYVSDLKGT  420
DPASLSNLGN SKQRSSVSNV ICNTEAERKS PSSSVNRKKR QKGSPAKIPK DELAASSQVI  480
EPPKNKGIGE GNKPLARGKR SASIRNSHEK KSVKPQDRSS SSNNIVEEDE SAPSTAVTKK  540
QANLPTKVRS RRKIVTEKPL TIDDVKNSEI LEKFSHCISS FQARRWCLFE WFYCAIDYPW  600
FARQEFVEYL DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS GQFLKEEKEK LYAYRDSVRK  660
HYDELNTGMR EGLPMDLARP LNVSQRVISL HPKSREIHDG SVLTVDHCRY RIQFDHPELG  720
VEFVKDTECM PLNPLENMPA SLARHYALSN YHSQNANEEK MHERVKESIP EGYLKLTYET  780
GHPISSPNYN ISNSLKQEKV DIPSSDPQAQ NGVNEAPESR LFNSQPSSIG HIHAREGDVQ  840
ALCELARALD KKELVLRELK CMNNEVVESR KDGHNALKDS ESFKKQYAAV LFQISEINEQ  900
VSLALLGLRQ RNTYQENLPY TSVRHMSESG EPDGQLMYVD NYASDTNGFH VSEIVDSSRI  960
KARKMVYRAI QALASLRKDE NNVVNIEEAI DFVNNELSVD ETEGSSVQQT QAAQDQRLPS  1020
TPNPPSSTHA DDSHVNPLDQ NDLQVPTELV SRCMATLLMI QRCTERQFPP SEVAQVLDSA  1080
VASLQPCCSQ NLPIYTEIQK CMGIIRNQIL ALVPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g19450

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887223.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887224.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887225.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	D7L0S7	0.0	D7L0S7_ARALL; Always early protein 3
STRING	fgenesh2_kg.3__2365__AT3G21430.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]