PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 332aa    MW: 38321.3 Da    PI: 9.4371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1624115199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkv+     ++s  lv+p  f+ ++ ++k+ + ++ l de gr W v+   +   +  ++ +kGW++F++++ L+ gDf++F++dg+s+f   v++f k
  Tp2g29690  24 FFKVF--LPEFSSLELVIPQAFI-DI-LEKPLPNQVLLVDEMGRLWGVET--KTEERFvFFSKKGWEKFANDQSLEFGDFLLFSYDGDSRF--AVTIFAK 115
                78888..77788888********.66.34569999***************..66666667777************************9999..8988865 PP
2B340.74.2e-13226315998
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                 +++++++ +p +f++++g+++ee  ++ l de+g++W +k+   ++++r +  + W  F+++++L+    ++F+++  ++ ++ + +v++fr
  Tp2g29690 226 TTGSLRQMEIPTTFLKANGIETEE--DMELCDENGKKWPMKIVKHNRGRR-FSHESWLCFCQSHKLRKPNKCLFEFIvtSNgTCSQILVRIFR 315
                5678899***********999777..68888***********65555555.5677********************663355567777777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2021118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.04322116IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-2123118IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-1724116IPR003340B3 DNA binding domain
CDDcd100171.22E-1324113No hitNo description
PfamPF023621.2E-1424115IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-17214315IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-17214315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124218317IPR003340B3 DNA binding domain
CDDcd100171.53E-13219315No hitNo description
SMARTSM010192.9E-14221317IPR003340B3 DNA binding domain
PfamPF023621.9E-11226315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVETGEKKVS SPSSSSYARK GLDFFKVFLP EFSSLELVIP QAFIDILEKP LPNQVLLVDE  60
MGRLWGVETK TEERFVFFSK KGWEKFANDQ SLEFGDFLLF SYDGDSRFAV TIFAKDGCKK  120
DLANAVRSRV ALEKEPVIVK PLDISTKPEP REGCGKRVMP NRKRVSVKQE PTVLVEVEPE  180
NQRNTRRKVN RGRGPCEMSW VPEKKHKGFE EPVYKPENPH FVRNITTGSL RQMEIPTTFL  240
KANGIETEED MELCDENGKK WPMKIVKHNR GRRFSHESWL CFCQSHKLRK PNKCLFEFIV  300
TSNGTCSQIL VRIFRGRVLT TVTKNCYQVL DM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-12221189104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651702.11e-171putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-143Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A3P6BQY11e-170A0A3P6BQY1_BRACM; Uncharacterized protein
STRINGBra012121.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-145B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]