PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 916aa MW: 102436 Da PI: 8.7273

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g20770	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT+ E e+++da +++G + Wk++a+ m + R+ Tp2g20770 44 QWTKGELERFYDAYRKHGRD-WKKVAAAMRNSRSV 77 6***************77.******987875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.369	40	94	IPR017884	SANT domain
SuperFamily	SSF46689	2.92E-8	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-6	44	80	IPR001005	SANT/Myb domain
CDD	cd00167	0.00158	45	87	No hit	No description
Pfam	PF06584	2.6E-31	576	676	IPR033471	DIRP domain
SMART	SM01135	5.0E-56	576	677	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MAPSRKSKNV NKRFTSEAAP EIDLRNSSKI KQRMKKLTDK LGPQWTKGEL ERFYDAYRKH 60 GRDWKKVAAA MRNSRSVDMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEGSESE 120 GEGHGASGVS RKNQNRKLAK VLSSDFLEEA IPPQSIASAE GCLSFLKLTQ AYGNERRATG 180 KRTPRFPVPS ADQRNDREGS APPIKRAKKQ FEADDDDYDD ALALAFANAS RRVGGSPYRR 240 TELNDSTPNG KRSQAKEAQS NHSPSSMFEN VVRLSRDRRH KKGAPDRDGA LLMDMEGVGT 300 VEVPQKKKTV RFEEAEGDAS DDSGEACIAN ERLKSKPQEG LVDIVASTDE LDALCALAEL 360 SRSQRPAGLM ESESSAQLKE ERVANTRETV STSHHTEKAK QAGPEDCLLH AVSAADNRKP 420 KSAQELVDGN AVLIGESDTS RRKRKHLRSK ESAEDENVKT LIKPRRAGQG PAKQLRTEKT 480 SEESSSTSDK KITGPDAVVS ATQVSGLSPA SLPQKQPNRR KMSLKKSFQE RSKSSETTHD 540 KPHSYEIYSE HELLKEKVST CLSYPLVRRR CIYEWFYSAI DYPWFAKMEF IDYLNHVGLG 600 HVPRLTRLEW SVIKSSLGRP RRFSERFIQE ERDKLKQYRE NVRKHYTELR TGAREGLPTD 660 LAQPLSVGNR IVAIHPKTRE IHDGKILTVD HNKCNVLFDE LGVDLVMDID CMPLNPLEYM 720 LDGLRQIDNC LSISKEAQLN RHLSSDASVL FPPSVLENVS FSINPPKKQA ASLVKDEEDV 780 GNMVQQALDS MGEHQPLDNS IVSAMKHQDQ SSGSLDRRSH QSQPPSNTGE LMTKGFIGSG 840 KNETQMASEL IRSCVSTWLM IQMCTEKQYP PADVAQVMET AVSSLQPRCP QNMPIYREIQ 900 TCMGWITNQI MALLKT

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MAPSRKSKNV NKRFTSEAAP EIDLRNSSKI KQRMKKLTDK LGPQWTKGEL ERFYDAYRKH  60
GRDWKKVAAA MRNSRSVDMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEGSESE  120
GEGHGASGVS RKNQNRKLAK VLSSDFLEEA IPPQSIASAE GCLSFLKLTQ AYGNERRATG  180
KRTPRFPVPS ADQRNDREGS APPIKRAKKQ FEADDDDYDD ALALAFANAS RRVGGSPYRR  240
TELNDSTPNG KRSQAKEAQS NHSPSSMFEN VVRLSRDRRH KKGAPDRDGA LLMDMEGVGT  300
VEVPQKKKTV RFEEAEGDAS DDSGEACIAN ERLKSKPQEG LVDIVASTDE LDALCALAEL  360
SRSQRPAGLM ESESSAQLKE ERVANTRETV STSHHTEKAK QAGPEDCLLH AVSAADNRKP  420
KSAQELVDGN AVLIGESDTS RRKRKHLRSK ESAEDENVKT LIKPRRAGQG PAKQLRTEKT  480
SEESSSTSDK KITGPDAVVS ATQVSGLSPA SLPQKQPNRR KMSLKKSFQE RSKSSETTHD  540
KPHSYEIYSE HELLKEKVST CLSYPLVRRR CIYEWFYSAI DYPWFAKMEF IDYLNHVGLG  600
HVPRLTRLEW SVIKSSLGRP RRFSERFIQE ERDKLKQYRE NVRKHYTELR TGAREGLPTD  660
LAQPLSVGNR IVAIHPKTRE IHDGKILTVD HNKCNVLFDE LGVDLVMDID CMPLNPLEYM  720
LDGLRQIDNC LSISKEAQLN RHLSSDASVL FPPSVLENVS FSINPPKKQA ASLVKDEEDV  780
GNMVQQALDS MGEHQPLDNS IVSAMKHQDQ SSGSLDRRSH QSQPPSNTGE LMTKGFIGSG  840
KNETQMASEL IRSCVSTWLM IQMCTEKQYP PADVAQVMET AVSSLQPRCP QNMPIYREIQ  900
TCMGWITNQI MALLKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g20770

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394955.1	0.0	protein ALWAYS EARLY 1 isoform X1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	V4MLC3	0.0	V4MLC3_EUTSA; Uncharacterized protein
STRING	XP_006394955.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	3e-74	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]