PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g27130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 377aa    MW: 41387.6 Da    PI: 9.8553
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g27130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.9e-1819109273
   trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  Tp1g27130  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrissgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109
                **************777776666555666666677777777769999****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138372.7E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRISSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFGSESSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFEVVESKT HPSSTAATAV TAAVAAAAAA  180
ATGSGNGSGG GLQIQKMIQQ QQGLGSVQKH QMIQPPPVLL PLPPPPPPPS QPPQPRPLLL  240
PPPPPPSFHA QPILPTVDTS PAKRRRTMPT TTAGPSGGGG NAETEEGETV VAAALSRSAS  300
VIANAIRESE ERQDRRHKEV MSLQERRLKI EESNVEMNRE GMNGLVEAIN KLASSILALA  360
SSSSSSRHSN QHQGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g27130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534730.0AK353473.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-44-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489615.11e-178PREDICTED: protein SCARECROW-like isoform X2
TrEMBLA0A087HS011e-177A0A087HS01_ARAAL; Uncharacterized protein
STRINGA0A087HS011e-178(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.16e-72Trihelix family protein