PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g19630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 33068.1 Da PI: 4.8807 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 5.9e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l +s Tp1g19630 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58 79******************************************998776 PP | |||||||
2 | K-box | 20.5 | 2e-08 | 121 | 192 | 9 | 80 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + +++ e+l+qe+ +L++++++ ++e+R++ + + s+++ + e+qL + l+++ +++++ll ++++ Tp1g19630 121 AINSDVEELEQEVCRLQQQLQMAEEELRRYEPDPVRFTSMEDYEVCEKQLLDTLTHVVQRREHLLSNHLSSY 192 5567899***********************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.973 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.65E-34 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 8.11E-29 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK 60 TRIEDVFTRF INLPNQEREN ALFFPDQARR PDIQSKEYLL RILQQLKSEN DIALQLTNPT 120 AINSDVEELE QEVCRLQQQL QMAEEELRRY EPDPVRFTSM EDYEVCEKQL LDTLTHVVQR 180 REHLLSNHLS SYETSTMQQS IAGPFVNGVV EGWLSENGPN QAHLFDASAH SNQLRELSSA 240 MYEPLLQGSS SSSNQNNMSE CHVANHNGEM FPEWAQAYSF ASMNQVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 5e-18 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_B | 5e-18 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_C | 5e-18 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_D | 5e-18 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g19630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056457 | 0.0 | DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024008876.1 | 0.0 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 0.0 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A087HQB9 | 0.0 | A0A087HQB9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HQB9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-172 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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