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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10028949m |
| Common Name | EUTSA_v10028949mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 223aa MW: 25487.9 Da PI: 9.4678 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10028949m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.8 | 9.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
Thhalv10028949m 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
79***********************************************96 PP
|
| 2 | K-box | 74.7 | 2.5e-25 | 83 | 172 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++++ + e L ++ie+L+ ++R+llGe+L+ s++eLqqLe+qL++sl+kiR+kK++ll+e+ie+l++ke++l enk+L++k+e
Thhalv10028949m 83 RDGNSQEGKGETYGLARKIEQLEISKRKLLGEGLDASSIEELQQLENQLDRSLTKIRAKKYQLLREEIEKLKEKERNLIAENKMLKEKYE 172
56678888999999*************************************************************************986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.071 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.36E-40 | 3 | 72 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.79E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.6E-24 | 86 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.285 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60
SSITKTVERY QKRIQDLGSD HKRDGNSQEG KGETYGLARK IEQLEISKRK LLGEGLDASS 120
IEELQQLENQ LDRSLTKIRA KKYQLLREEI EKLKEKERNL IAENKMLKEK YEMERGGTVA 180
RTSPSSSTSE EVDIYDNEIE EVVTDLFIGP PETRHSKKFP PN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:24121311}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK230464 | 0.0 | AK230464.1 Arabidopsis thaliana mRNA for MADS-box protein AGL14, complete cds, clone: RAFL26-03-G06. |
