PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024328m

Common Name

EUTSA_v10024328mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 959aa MW: 105598 Da PI: 5.6812

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024328m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	587	637	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Thhalv10024328m 587 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 637 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-26	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-23	859	947	No hit	No description
Pfam	PF00564	1.9E-20	862	943	IPR000270	PB1 domain
SMART	SM00666	1.6E-28	862	944	IPR000270	PB1 domain
PROSITE profile	PS51745	27.83	862	944	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-27	862	943	No hit	No description
CDD	cd06407	1.51E-34	863	943	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MCEPDDNTAR NGVTPQASRS RELLMDVDDL DLDGSWPLDQ IPYLSSASRM ISPIFVSSSS 60 EQPCSPLWAF SDGGGTNHAT AGGDDEKISS ASGVPSFRLA DYPLFLPYSS PSVAENTAEK 120 QNSFQFPSPL MSLVPPENAD NYCVIKERMT QALRYFKEST EQHVLAQVWA PVRKNGRDLL 180 TTLGQPFVLN PNGNGLNQYR MISLTYMFSV DSESDIELGL PGRVFRQKLP EWTPNVQYYS 240 SKEFSRLDHA LHYNVRGTLA LPVFNLSGES CIGVVELIMT SEKIHYAPEV DRVCKALEAV 300 NLKSSEILDH QTTQICNESR QNALAEILEV LTVVCETHNL PLAQTWVPCQ HGSVLANGGG 360 LKKNCTSFDG SCMGQVCMST TDMACYVVDA HVWGFRDACL EHHLQKGQGV AGRAFLNGGS 420 CFCRDITKFC KTQYPLVHYA LMFKLTTCFA ISLQSSYTGD DSYILEFFLP SSITDDQEQD 480 ALLGSLLVTM KEHFQSLRVA SGVDFGEDDD KLSFEIIRAL PDKKIHSKIE SIRVPFSGFK 540 SNATETLLIP QHAVQSSDPV NEKSNVATVN GVVKEKKKTE KKRGKTEKTI SLDVLQQYFT 600 GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL 660 TSMAVSSIPW THGHQTAAQP LNSPSGSKPP ELPNTDNSPN HWSSDHSPHE PNGSPELPNN 720 GHKRSRTADE SAGTPTSHGS CDGNQLDETK VLNQDPLFTV GGSPGLFFPP YSRDHDVSAA 780 SFSLPNRLLG TIDHFRGMPI EDAGSSKDLR NLCSTAAFED KFPDSNWMTN DNNSNNNNIY 840 APPKEEAIVN ITREPSGSEM RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG 900 TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL VHDATTNLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MCEPDDNTAR NGVTPQASRS RELLMDVDDL DLDGSWPLDQ IPYLSSASRM ISPIFVSSSS  60
EQPCSPLWAF SDGGGTNHAT AGGDDEKISS ASGVPSFRLA DYPLFLPYSS PSVAENTAEK  120
QNSFQFPSPL MSLVPPENAD NYCVIKERMT QALRYFKEST EQHVLAQVWA PVRKNGRDLL  180
TTLGQPFVLN PNGNGLNQYR MISLTYMFSV DSESDIELGL PGRVFRQKLP EWTPNVQYYS  240
SKEFSRLDHA LHYNVRGTLA LPVFNLSGES CIGVVELIMT SEKIHYAPEV DRVCKALEAV  300
NLKSSEILDH QTTQICNESR QNALAEILEV LTVVCETHNL PLAQTWVPCQ HGSVLANGGG  360
LKKNCTSFDG SCMGQVCMST TDMACYVVDA HVWGFRDACL EHHLQKGQGV AGRAFLNGGS  420
CFCRDITKFC KTQYPLVHYA LMFKLTTCFA ISLQSSYTGD DSYILEFFLP SSITDDQEQD  480
ALLGSLLVTM KEHFQSLRVA SGVDFGEDDD KLSFEIIRAL PDKKIHSKIE SIRVPFSGFK  540
SNATETLLIP QHAVQSSDPV NEKSNVATVN GVVKEKKKTE KKRGKTEKTI SLDVLQQYFT  600
GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL  660
TSMAVSSIPW THGHQTAAQP LNSPSGSKPP ELPNTDNSPN HWSSDHSPHE PNGSPELPNN  720
GHKRSRTADE SAGTPTSHGS CDGNQLDETK VLNQDPLFTV GGSPGLFFPP YSRDHDVSAA  780
SFSLPNRLLG TIDHFRGMPI EDAGSSKDLR NLCSTAAFED KFPDSNWMTN DNNSNNNNIY  840
APPKEEAIVN ITREPSGSEM RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG  900
TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL VHDATTNLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024328m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413484.1	0.0	protein NLP7
Refseq	XP_024005488.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MHY8	0.0	V4MHY8_EUTSA; Uncharacterized protein
STRING	XP_006413484.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Thhalv10024328m
Entrez Gene	18030707

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]