PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019941m

Common Name

EUTSA_v10019941mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 1122aa MW: 125943 Da PI: 8.6611

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019941m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	46	80	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE e+++++ +++G++ Wk++a+ + R++ + Thhalv10019941m 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSADM 80 6*****************.*****99.999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.83E-10	43	92	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	1.26E-4	47	89	No hit	No description
Pfam	PF06584	8.6E-30	598	698	IPR033471	DIRP domain
SMART	SM01135	3.8E-59	598	699	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence Send to blast
MAPSRSKKSK YKKTSRGKAV SPRKDEESMS KAKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSADM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQERNEGIK TLRSAPKRSR VKSSDHPSIG LEGLSDRLQF RSSSGYLPSL KKRRTETVPR 180 AVGKRTPRIP ISYTPEKDTR ERYLSPVKRC HNQKGDDTDD DMEHEIALAL TEASQRGGST 240 KNSHTPNRKA KIYPPDKQGE RMRADIDMAI AKLRATEMED ARCEPSLGST EADNSGGRNE 300 MTPGEGSSAM DKGKKYYRRR LGIKEDDVKE AGSGTDEAQS LGTLDEKFEP EVDGKPLKFT 360 YRSSRRKSKK SLFTADEDAA CDALQTLADL SLMMPETATD TESSVQAEEK RAGKAYVSDY 420 KGTDAAAISK RGSLRNPKQR RSVSNDICDN EAERKSPSSS VIRKGRLKTS PAKVPKDELA 480 AISEVIEPPK NKGIGEGNKP VGRGKRSTST RNTHEKKSLK PPDHTSSSNN IVEEDESAPP 540 TTVTKKQVNL TTKVRSRRKI VTEKPLTIDD VKSSEILEKF SHCISSFRAR RWCFFEWFYS 600 AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSAQFL KEEKEKLYLY 660 RDSVRKHYDE LNTGTREGLP MDLARPLNVS QRVISVHPMS RESHDGSVLT VDHCRYRIQF 720 DHPELGVEFV KDTECMPLNP LENMPASLAR HYALSTYDIQ NPSEEKMHDR VQENMPEGYL 780 KLSCDTGHPL NSPIYNVSNS LKEEKVDISS SDPQAQHVVD GALDLQMYNS QPSSIGHIHA 840 READVQALSE LTRALDKKEL VLRELKCMNN EVVESQKDGH HALKDSESFK KQYAAVLFQL 900 SEINEQVSLA LLGLRQRNTY QENVPYTSIR RMSKSGEPDG QLTDLDNNAS DTNGFHVSEI 960 VDSSRIKARK MVYRAVQALA LLRKDENNGV NIEEAIDFVN NQLSVDQTEG SSVQQTQAAQ 1020 DQRLPSTPNP PSSTHADTSD ANPPEQKELQ IPSELVSRCM ATLLMIQRCT ERQFPPSEVA 1080 QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP S*

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence Send to blast

MAPSRSKKSK YKKTSRGKAV SPRKDEESMS KAKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSADM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQERNEGIK TLRSAPKRSR VKSSDHPSIG LEGLSDRLQF RSSSGYLPSL KKRRTETVPR  180
AVGKRTPRIP ISYTPEKDTR ERYLSPVKRC HNQKGDDTDD DMEHEIALAL TEASQRGGST  240
KNSHTPNRKA KIYPPDKQGE RMRADIDMAI AKLRATEMED ARCEPSLGST EADNSGGRNE  300
MTPGEGSSAM DKGKKYYRRR LGIKEDDVKE AGSGTDEAQS LGTLDEKFEP EVDGKPLKFT  360
YRSSRRKSKK SLFTADEDAA CDALQTLADL SLMMPETATD TESSVQAEEK RAGKAYVSDY  420
KGTDAAAISK RGSLRNPKQR RSVSNDICDN EAERKSPSSS VIRKGRLKTS PAKVPKDELA  480
AISEVIEPPK NKGIGEGNKP VGRGKRSTST RNTHEKKSLK PPDHTSSSNN IVEEDESAPP  540
TTVTKKQVNL TTKVRSRRKI VTEKPLTIDD VKSSEILEKF SHCISSFRAR RWCFFEWFYS  600
AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSAQFL KEEKEKLYLY  660
RDSVRKHYDE LNTGTREGLP MDLARPLNVS QRVISVHPMS RESHDGSVLT VDHCRYRIQF  720
DHPELGVEFV KDTECMPLNP LENMPASLAR HYALSTYDIQ NPSEEKMHDR VQENMPEGYL  780
KLSCDTGHPL NSPIYNVSNS LKEEKVDISS SDPQAQHVVD GALDLQMYNS QPSSIGHIHA  840
READVQALSE LTRALDKKEL VLRELKCMNN EVVESQKDGH HALKDSESFK KQYAAVLFQL  900
SEINEQVSLA LLGLRQRNTY QENVPYTSIR RMSKSGEPDG QLTDLDNNAS DTNGFHVSEI  960
VDSSRIKARK MVYRAVQALA LLRKDENNGV NIEEAIDFVN NQLSVDQTEG SSVQQTQAAQ  1020
DQRLPSTPNP PSSTHADTSD ANPPEQKELQ IPSELVSRCM ATLLMIQRCT ERQFPPSEVA  1080
QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019941m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406270.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	V4M5Z5	0.0	V4M5Z5_EUTSA; Uncharacterized protein
STRING	XP_006406270.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Thhalv10019941m
Entrez Gene	18023526

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]