PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013360m
Common NameEUTSA_v10013360mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 494aa    MW: 55821 Da    PI: 7.3239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013360mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11318363555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e + sLq
  Thhalv10013360m 318 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTVAREQLTSLQ 363
                      8899********************97.....8***********99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15314380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10315366No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13317380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSDLILSCSY VISLDGYYNE ASQEPSTSLG SLARSLFHEY RQSVIPLQNG YVPSMAFMNN  60
LPYLEIRQDD IQRLAYNDAQ RLFYQEARIQ TVIFMGCRSG EIELGLTYDA ANMKIEASLR  120
EWFPEDFNRK TSPVNSDNLR PPPHPPSSSS SSLRSLDSPQ NVSEYSSLLF PHVPKPSTTD  180
AVNVPLHPLL APVTTTTMSN MIRQQQHEPL FLNRDQREEE AMTQAILAVL TASSSPPSTS  240
SSPQRKGNAT AFKRYYRVFS GRSPPPNVRK QSIMKRAISF YNTLNIYRRE RFASKNATTG  300
GGDGSGSVRG PNATQLHHMI SERKRREKLN ESFQALRSLL PPGTKKDKAS VLTVAREQLT  360
SLQDEIPRLL ERIGELEAKQ AGEREMEYDL GPDERFNVRL RQIPESTSSE RIFDLRVVHR  420
EDNIMADDLL IRILEFLKQI NNVSLVSIEA RTRAREDEAT SVVLVSLRLK IEGEWDESAF  480
QEAVRRVVAD LAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326ERKRRE
2322327RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013360m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240357e-39AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026887e-39CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401262.20.0putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLV4KXH90.0V4KXH9_EUTSA; Uncharacterized protein
STRINGXP_006401262.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]