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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10006748m | ||||||||
Common Name | EUTSA_v10006748mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 902aa MW: 99658.2 Da PI: 5.6352 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 155 | 256 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++ Thhalv10006748m 155 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RD 244 99*********************999****996444444..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+v+v+r+ Thhalv10006748m 245 EKSQLMVGVRRA 256 77778*****97 PP | |||||||
2 | Auxin_resp | 111.6 | 7.9e-37 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ Thhalv10006748m 281 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 364 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-45 | 145 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-42 | 148 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-23 | 154 | 255 | No hit | No description |
Pfam | PF02362 | 4.6E-22 | 155 | 256 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 155 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-25 | 155 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.8E-32 | 281 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.6E-9 | 789 | 878 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.327 | 792 | 876 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.49E-7 | 806 | 871 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 902 aa Download sequence Send to blast |
MMASMACVED KMKTNGLVSG GTTTTSQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL 60 VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE 120 IYAQMSLQPV HSERDVFPVP DFGLLRGSKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL 180 FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL 240 FIRDEKSQLM VGVRRANRQQ TALPSSVLSA DSMHIGVLAA AAHATANRTP FLIFYNPRAC 300 PAEFVIPLAK YRKAICGSQL SVGMRFGMMF ETEDSGKRRY MGTIVGISDL DPLRWPGSKW 360 RNLQVEWDEP GCNDKPTRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK 420 RPLIRVSDSA NGILPYASFP NMASEQLMKM MMRPHNNQNA TSFMSEMQQN VLMGHGGLLG 480 DMKMQQPMVR NQKSEMVQPE SKLTVNPSAS NISGQEQNLS QSMNAPAEPE KSTLSGCSSG 540 RVNHGSEQQS MEQASQVKTV TVSNEEKVNQ LIQKPSALSP PQADSCPDIT QQMYPPLSDP 600 NPINGFSFLE TDELTSQVST FQSLSGSYKQ PPMLSSQDSS AVVLPDSTNS SLFHDLWDTQ 660 LNGLKFDQFS PLMQQDLYAC QNMCMSNSTH SNILDPPLSN TVLDDFCAIK ETDFQNQPSD 720 CLVGNNNSSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDTSLLQNSK 780 GSWQKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYEELKS AIECMFGLEG LLTQPQSSGW 840 KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV 900 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 389 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10006748m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353257 | 0.0 | AK353257.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-P01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416458.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | E4MXL0 | 0.0 | E4MXL0_EUTHA; Auxin response factor | ||||
TrEMBL | V4MSL0 | 0.0 | V4MSL0_EUTSA; Auxin response factor | ||||
STRING | XP_006416458.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10006748m |
Entrez Gene | 18992943 |