PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006035m
Common NameEUTSA_v10006035mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 384aa    MW: 43264 Da    PI: 6.8994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006035mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05217236120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Thhalv10006035m 217 FSCPVCFKTFNRYNNMQMHM 236
                      89*****************9 PP
2zf-C2H214.40.00011301323123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  Thhalv10006035m 301 FMCRKCGKAFAVRGDWRTHEKNC 323
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64217244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SuperFamilySSF576672.04E-6283321No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5297321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808301321IPR007087Zinc finger, C2H2
SMARTSM0035549301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNRFHH YPNSSSTNPS PSPPPPPPTS SFFFFPQSGD LRRPPTPLTP  60
PPSPPLREAL PLLSLSPANK QQDHHDHLIQ EPPSTSMDVD YDHHHHHHHQ DDHNLDDDDH  120
DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEII NDKKDLDNDY PHGAAGGGED  180
DDEDSVGGDG GCRISRLNKG QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG  240
SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP  300
FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF  360
DEEDEPASEV EQLDNDHESM QSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006035m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402857.10.0zinc finger protein WIP2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV4L2010.0V4L201_EUTSA; Uncharacterized protein
STRINGXP_006402857.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-179C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]