PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004496m
Common NameEUTSA_v10004496mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 352aa    MW: 40360.3 Da    PI: 9.9072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004496mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.8e-1821113199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     ++ + l +p  f+ ++ ++k+ +k++ l de gr W v+ + + + + +v++kGW++F++++ L+ gDf+vF++dg+s+f   v
  Thhalv10004496m  21 FFKVF--LPEFSARELEIPTAFI-DI-LEKPIPKQVLLVDEIGRLWGVETKAEERNRLVVFQKGWERFANDQSLEFGDFLVFSYDGDSRF--SV 108
                      78888..67778888********.56.34569999***************87777777****************************9999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f k
  Thhalv10004496m 109 SIFAK 113
                      99876 PP
2B334.53.7e-11244324991
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +++++++ +p +f++++g++ e+  ++ l de+g++W +k+ ++ +s++  +  + W  F ++++L+  D ++F+++ +s+++
  Thhalv10004496m 244 TSGSLRQMEIPTTFLKSNGIDMEK--DIELCDENGKKWPLKI-VNHCSRGlKFSYDSWLLFSQSHKLRRPDKCLFEFIVTSDGR 324
                      5678889***********999655..79999***********.4555555666669********************88655543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-2212116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2114116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.36719114IPR003340B3 DNA binding domain
PfamPF023623.7E-1621113IPR003340B3 DNA binding domain
CDDcd100172.93E-1821111No hitNo description
SMARTSM010194.5E-1821114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14230328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-14232322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.447236336IPR003340B3 DNA binding domain
CDDcd100172.29E-9237318No hitNo description
SMARTSM010193.2E-8239336IPR003340B3 DNA binding domain
PfamPF023625.9E-9244324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVESGEKVSP PSSSQPKDLE FFKVFLPEFS ARELEIPTAF IDILEKPIPK QVLLVDEIGR  60
LWGVETKAEE RNRLVVFQKG WERFANDQSL EFGDFLVFSY DGDSRFSVSI FAKEGCKKDL  120
GVVSTNRVSV EKGPVAVEPA DISTNPGRRE RRGKRVNLNR KRDLVKEKPS VRAETEPQYV  180
STIKTEPDYV PAIKTEPKHR ENTLRKVNRS RDPCGISWVP KKKHKGFEES EYKPKNPHFV  240
RNITSGSLRQ MEIPTTFLKS NGIDMEKDIE LCDENGKKWP LKIVNHCSRG LKFSYDSWLL  300
FSQSHKLRRP DKCLFEFIVT SDGRCNQVLV RILPGRLLTT VSKNRYQVLA M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-14121162104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004496m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530220.0AK353022.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-E02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393897.20.0putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-145Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLV4KUZ70.0V4KUZ7_EUTSA; Uncharacterized protein
STRINGXP_006393897.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-148B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]