PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10003596m

Common Name

EUTSA_v10003596mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 980aa MW: 109563 Da PI: 9.5414

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10003596m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.8e-09	44	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT E e+++da +++Gg+ Wk++a+ + ++R+ +++ Thhalv10003596m 44 QWTRGELERFYDAYRKHGGK-WKKVAAAVRNNRSVEMV 80 6*****************.*******99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-7	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-6	44	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-4	44	77	IPR009057	Homeodomain-like
CDD	cd00167	0.00374	45	87	No hit	No description
SMART	SM01135	4.3E-58	582	683	IPR033471	DIRP domain
Pfam	PF06584	8.0E-32	582	682	IPR033471	DIRP domain
SMART	SM00333	8.6E-4	669	726	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MAPSRKSKSV NKRFTNEASP EIDYRNSSKT KQRKKKLADK LGPQWTRGEL ERFYDAYRKH 60 GGKWKKVAAA VRNNRSVEMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEGSESE 120 GEGHVASGVP RKYLKRKRAK VSPSNFREEA STPHSIASAE GCLPFLKLTQ AYGIERRATA 180 KRTPRFPVPI ADKRDDREDS TPRNKRAKKQ LDDGDDDDDD ETLALTLANA SRRGGGSPYR 240 RTKLHDSTPS GKMSQSKEAQ AKLRASSMFD NGVTISRDRR HIKGSRDRDG ALLMDMGGLG 300 TVEIPQKEKN VRFEEAERDA SDDSGEACNA NERRKPKPQK RVVETEGSRD ELEALYALAE 360 LSASLTPAGL MKLESSAQLQ KERVANNVDE KSNTPETVST SHTREKAKQA GPEDRLLHAV 420 SATDNRKLTS AQELVDGNDV SIGELGTSRR KRKPLHNKEL ADVYLKTLVK ERRAGQGPAK 480 QLKTAKNSEE FSSTSDKKIT GPDAVVSATQ VSGSGPASLP QKPPNRRKMS LKKSLQERAK 540 TYETTPEKPH SYETFSEHEL LKKVSTCLSY PLVRRRCIFE WFYSAIDYPW FAKMEFTDYL 600 NHVGLGHVPR LTRLEWSVIK SSLGRPRRFS ERFIQEERDK LKQYRESVRK HYTELRAGAR 660 EGLPTDLAQP LSVGNRVIAI HPKTREIRDG KILTVDHDKC NVLFDETGFE LVMDIDCMPL 720 NPLEYMPEGL RRQIDNCLSI SKESQLNRNP NSDASVLFPP SVLENIDFSM TPPVKQDDRD 780 RPVSTDQSYN TSNSKARRAE IQRALMLKHS SDAEEMEPEM LGIVSGSRSI AQAMVDAAMK 840 AASSVKGEED AGNMVKQAVG SIGEHQPLDN FVETTNGSLD HHHQSRSPSI TAEPMTKGLI 900 GSGKNETQMA SELISSCVST WLMIQMCTEK QYPPADVAQV METAVSSLQP RCPQNMPIYR 960 EIQTCMGWIK NQIMALVRT*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MAPSRKSKSV NKRFTNEASP EIDYRNSSKT KQRKKKLADK LGPQWTRGEL ERFYDAYRKH  60
GGKWKKVAAA VRNNRSVEMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEGSESE  120
GEGHVASGVP RKYLKRKRAK VSPSNFREEA STPHSIASAE GCLPFLKLTQ AYGIERRATA  180
KRTPRFPVPI ADKRDDREDS TPRNKRAKKQ LDDGDDDDDD ETLALTLANA SRRGGGSPYR  240
RTKLHDSTPS GKMSQSKEAQ AKLRASSMFD NGVTISRDRR HIKGSRDRDG ALLMDMGGLG  300
TVEIPQKEKN VRFEEAERDA SDDSGEACNA NERRKPKPQK RVVETEGSRD ELEALYALAE  360
LSASLTPAGL MKLESSAQLQ KERVANNVDE KSNTPETVST SHTREKAKQA GPEDRLLHAV  420
SATDNRKLTS AQELVDGNDV SIGELGTSRR KRKPLHNKEL ADVYLKTLVK ERRAGQGPAK  480
QLKTAKNSEE FSSTSDKKIT GPDAVVSATQ VSGSGPASLP QKPPNRRKMS LKKSLQERAK  540
TYETTPEKPH SYETFSEHEL LKKVSTCLSY PLVRRRCIFE WFYSAIDYPW FAKMEFTDYL  600
NHVGLGHVPR LTRLEWSVIK SSLGRPRRFS ERFIQEERDK LKQYRESVRK HYTELRAGAR  660
EGLPTDLAQP LSVGNRVIAI HPKTREIRDG KILTVDHDKC NVLFDETGFE LVMDIDCMPL  720
NPLEYMPEGL RRQIDNCLSI SKESQLNRNP NSDASVLFPP SVLENIDFSM TPPVKQDDRD  780
RPVSTDQSYN TSNSKARRAE IQRALMLKHS SDAEEMEPEM LGIVSGSRSI AQAMVDAAMK  840
AASSVKGEED AGNMVKQAVG SIGEHQPLDN FVETTNGSLD HHHQSRSPSI TAEPMTKGLI  900
GSGKNETQMA SELISSCVST WLMIQMCTEK QYPPADVAQV METAVSSLQP RCPQNMPIYR  960
EIQTCMGWIK NQIMALVRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10003596m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493764	0.0	AB493764.1 Arabidopsis thaliana At5g27610 mRNA for hypothetical protein, partial cds, clone: RAAt5g27610.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394955.1	0.0	protein ALWAYS EARLY 1 isoform X1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	V4MLC3	0.0	V4MLC3_EUTSA; Uncharacterized protein
STRING	XP_006394955.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-77	DNA binding

Link Out ? help Back to Top
Phytozome	Thhalv10003596m
Entrez Gene	18011997

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]