PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001779m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 608aa    MW: 67049.3 Da    PI: 8.5457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001779mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.6e-1154106247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      ++W t+E++ll++avk++G g+W+++a ++           ++++c+ +++++
  Thhalv10001779m  54 QAWGTWEELLLACAVKRHGFGDWDSVATEVRsrssisaVFVSANNCRQKYRDL 106
                      79*****************************7777777444788888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-547109IPR009057Homeodomain-like
SuperFamilySSF466896.58E-749109IPR009057Homeodomain-like
SMARTSM007171.5E-652109IPR001005SANT/Myb domain
PfamPF002491.4E-1054107IPR001005SANT/Myb domain
CDDcd001673.03E-755107No hitNo description
SMARTSM002973.4E-18131411IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.0E-15309407IPR001487Bromodomain
SuperFamilySSF473705.76E-16310410IPR001487Bromodomain
CDDcd043693.17E-15316406No hitNo description
PfamPF004391.9E-10316394IPR001487Bromodomain
PROSITE profilePS5001412.388321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MSIAENHEAG SYSMNDDTNN DYICSDDYNN HNNIGEEDND NNNNNDTDLK HKSQAWGTWE  60
ELLLACAVKR HGFGDWDSVA TEVRSRSSIS AVFVSANNCR QKYRDLKRRF QESAGGESDA  120
AAEEEERIGN IPWLEQLRSL RMAELRREVQ QYDVSILSLQ LKVKKLEEER EGDHKPDLEN  180
ESKRERSGND GSESEHREKA VSTAEESDRE NRSMNESNST ASGGKIAGED ERVGGDEPSP  240
TRDGSGDNNP DPDPVYKVEA AEEGSEASHS GELGETGTSG RKRKRRKLSA GSKSNHEGGA  300
GEIRSAASKS QPLTGLLDLI RSHPRGSLFE RRLRSQETKD YKLLVKQHLD IETIQRKLKQ  360
GSYESSRLTL YRDLQLLFTN AIVFFPASSS ESTAAHELRA VVSEEMRKET GKSGPRLINQ  420
EASAMTSIKA DAETSESSLS RQKSSAALVV CKRRSFVSAK ASPSSSSFSQ KEETKEETLS  480
EEKENIGTGV RSSRRANKEI ADAAVIANNT KMGKGKNKQK QTESKTNSSN DNTSNRSKQE  540
TELRSNSVGK RKRAEVENTP VKRAPGRPQK KAVEAAATAT ASASGKRGRE SGSTGKDNKQ  600
PKKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287GRKRKRRKL
2280285RKRKRR
3280286RKRKRRK
4280287RKRKRRKL
5281286KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001779m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010732.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC18015503
TrEMBLV4N1T00.0V4N1T0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006397618.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein