PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 328aa MW: 35915.5 Da PI: 6.7901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG043349t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Thecc1EG043349t1 138 YECKTCNRTFPSFQALGGHRASH 160 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Thecc1EG043349t1 220 HECSICGAEFTSGQALGGHMRRH 242 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.46E-9	137	160	No hit	No description
Pfam	PF13912	3.0E-13	137	162	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	138	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	138	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.46E-9	215	242	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	218	244	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	5.4E-13	219	244	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.263	220	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	220	242	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEAPEEVAMG SKDHSNIVKG KRTKRLRPQS PIPFAITSNS IHNEDEGEFD GNSANVDNKN 60 VTLLSPSSSS SSSEYQDSTE EEEDMANCLI LLAQGQSRQS TKQADDHDHH TGTDNKFTSR 120 KFMEAPSNGT GKAGYYVYEC KTCNRTFPSF QALGGHRASH KKPKTAAMVD EKTRQFTAAA 180 SDEEGQFIRT NNLSSLSLQL TNNNNNNRGL YSNNNKAKVH ECSICGAEFT SGQALGGHMR 240 RHRGPIGGSI PTASTALSLT VPVAMESEQP KKPRNVLSLD LDLNLPAPED DHRESKFPFA 300 SKQQQQQQQQ QQSPLVFSAP TLVDCHY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007010041.2	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A061FP50	0.0	A0A061FP50_THECC; C2H2-type zinc finger family protein, putative
STRING	EOY18851	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-74	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG043349t1
Entrez Gene	18586530

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]