PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042098t1 | ||||||||
Common Name | TCM_042098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | TALE | ||||||||
Protein Properties | Length: 842aa MW: 92569.7 Da PI: 6.7503 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.7e-09 | 651 | 688 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Thecc1EG042098t1 651 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 688 564459******************************87 PP | |||||||
2 | BELL | 107.1 | 1.1e-34 | 512 | 580 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl l+eeV++rYk y++q+q+ +ssFe vagl++a+pY+slAlk+++r+FrcL++ai++qi Thecc1EG042098t1 512 EYQQKKAKLLYLQEEVCRRYKLYHQQMQMAVSSFESVAGLNAATPYISLALKTVTRNFRCLRNAISDQI 580 89******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.0E-48 | 414 | 578 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-41 | 419 | 577 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 629 | 692 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-11 | 632 | 693 | No hit | No description |
SMART | SM00389 | 4.1E-8 | 632 | 696 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 633 | 698 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 635 | 696 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.0E-18 | 649 | 688 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MDMSKFRPES HVAQQSRRDK LRVQQSSNLV QYLEDFPNSL EQGSSVHPEL NPDLVQVRNV 60 RNANLLYDPT LVSSSVIHFS TNSNILTPQR DAMLQQELQT AQQNRQNPAE ESSFSGMSHT 120 ILSKLNASSK VSGDPQGCGN WKSVDSQHSC DWMVGYASGL ADRESNQNPM FVGEVLSNNA 180 RESNMSAATQ YLKPNYSAYQ DVQSTLSNPG SEISSHESKK HYGDLHFVSP SLYQNALQDV 240 VTTSSIATQG LEVASLVQPN VRETARGSWI DYCGNQSSSL HFDNAGAWMN RPLVEHCQQW 300 GGELGFLASK SSEELRTGAS DATTQGLSLS LSSNPTPKIC GAGQFAEEYG SDHGFNSKPG 360 EFRDSQDSKS SKPGYLYSMQ KPSVTSKSSG KSHQDTGGTS TYAYRHTGPL GPFTGYATIL 420 KNSRFLKPAQ ELLDEFCHMT NAKIVKICDA SEGISGELSV SASADAANAV DMEAGASKGN 480 NSGASSSSFY SSNEIRVDVG IGSSSGEPCR PEYQQKKAKL LYLQEEVCRR YKLYHQQMQM 540 AVSSFESVAG LNAATPYISL ALKTVTRNFR CLRNAISDQI RHISRALGEE FLSPTTGTSS 600 SKGDINMSRL KFVGQKSGGV NMGFLEPQQH GWRPQRGLPE RSVAILRAWL FEHFLHPYPT 660 DTDKHMLATQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ESKGLAEGQN SSKNDGKSGE 720 GGPSWLNEDQ SINRSCINVL SDKQLACSDM HVEGITGEEH WNHEKRSRMD FHIPTTMEGS 780 LMGFAPYQPS RLEMGGLGAV SLTLGLRHGV ESAQQHQQQY QRQEDQLRPQ FGGQMIHDFA 840 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 638 | 695 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 638 | 695 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016798.2 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017981918.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017981920.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017981921.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017981922.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A061GYR6 | 0.0 | A0A061GYR6_THECC; BEL1-like homeodomain 8, putative | ||||
STRING | EOY34417 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14321 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 5e-93 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042098t1 |
Entrez Gene | 18590911 |
Publications ? help Back to Top | |||
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