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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thecc1EG040898t1 |
| Common Name | TCM_040898 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
C2H2 |
| Protein Properties |
Length: 409aa MW: 45202.2 Da PI: 7.6036 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG040898t1 | genome | CGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00028 | 41 | 62 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C +C++ F++ L H+r H
Thecc1EG040898t1 41 VCRYCHREFKSAKALGGHLRIH 62
6*******************99 PP
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| 2 | zf-C2H2 | 14.3 | 0.00012 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C+ Fs+ +L +H+r+H
Thecc1EG040898t1 99 FTCFVCDDGFSSLKLLCQHMRNH 121
89********************9 PP
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| 3 | zf-C2H2 | 10.9 | 0.0015 | 313 | 332 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C++Cgk+F + L H
Thecc1EG040898t1 313 HQCEICGKTFQTGQALGGHK 332
79********8877776665 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13912 | 8.3E-6 | 40 | 63 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.951 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.22 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.868 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 0.047 | 99 | 124 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.035 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 2.9E-7 | 99 | 121 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.9E-7 | 308 | 335 | No hit | No description |
| Pfam | PF13912 | 6.2E-10 | 312 | 336 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.764 | 313 | 335 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.11 | 313 | 335 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 315 | 335 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MVPGDTSLDF LAQKLNAAEI IKLLEECVEA PDQSQDPTIR VCRYCHREFK SAKALGGHLR 60
IHSQHQSGSK AGIHHLENTE FAFSDLDSQQ SSEEDNAGFT CFVCDDGFSS LKLLCQHMRN 120
HREEDYNGIQ QPTPPQESTS LSEPQTTVEE GIDEVSPGND HNQGSSNDLL SYVSNWSATG 180
KRGRKQIDSD KIDGIIYNAV PLRVFYGSQV PWRERRLGDF ADSNQSLLKR KKQKTRLSKD 240
VSIESQSGAA NSYKTDSEAT VEVLGNSEQT TKNSISMATQ RGFESRISSK SISRSSHGKL 300
KKPKRAKAVN GVHQCEICGK TFQTGQALGG HKTYHRVKPV VDPSRGVLVQ RKAEEQLSGE 360
SGQVSDGFSR MPLPRPGELS GEAHPSAQSN QRVTKRLLDF DLNIPYRE*
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