PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038898t1
Common NameTCM_038898
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 377aa    MW: 42073.8 Da    PI: 6.512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038898t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Thecc1EG038898t1 14 KGPWSPEEDAKLKAYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding37.26.7e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG038898t1  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.381966IPR017930Myb domain
SuperFamilySSF466894.14E-2711109IPR009057Homeodomain-like
SMARTSM007172.1E-131364IPR001005SANT/Myb domain
PfamPF002491.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-251569IPR009057Homeodomain-like
CDDcd001672.79E-101662No hitNo description
PROSITE profilePS5129416.59567117IPR017930Myb domain
SMARTSM007174.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2370117IPR009057Homeodomain-like
CDDcd001674.21E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQSNINRLS SSNQDPNEVN TANDSQFSQG LSNSALERLH LHMQLQSLQN PFSFYNNPAL  180
WPKIHPLQEK MIQSIQSSNG RPNLLMQPLL PNPQPENERT ADFYDQPTAA SVAHQQDYPK  240
SSNTKGLELD NSLDGITTSD GSDPFGTGNN LMDSATVPKA DGHHHGTAQS NAAVQPVSNF  300
QAELDEFLNN KTAGYVPQED QMTEFDCFKE MNGAKDSLIW WSNDFDAKSA SSNSWDSTSV  360
LQSSGMFQDY ELAYNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156430.0HQ115643.1 Gossypium hirsutum DNA-binding transcription factor blind 1 mRNA, complete cds.
GenBankJF8203890.0JF820389.1 Gossypium barbadense clone T-h7124-5 MYB5 (MYB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014145.20.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-104MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A061GXE30.0A0A061GXE3_THECC; Myb domain protein 36
STRINGEOY317640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78982639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-102myb domain protein 36
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]