![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG034652t1 | ||||||||
Common Name | TCM_034652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 681aa MW: 74972.1 Da PI: 6.795 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 325 | 384 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Thecc1EG034652t1 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 384 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 429 | 478 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Thecc1EG034652t1 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 478 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.34E-22 | 325 | 392 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-16 | 325 | 394 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-13 | 325 | 384 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-16 | 326 | 393 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-29 | 326 | 398 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 326 | 392 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 327 | 338 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-17 | 427 | 487 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.46E-24 | 427 | 488 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 428 | 486 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 428 | 486 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 428 | 492 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 429 | 478 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 468 | 488 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 681 aa Download sequence Send to blast |
MKTMNDSSNG SNNNWLAFSL SPHMKMEVAS DPQHRHHQYH HHSQASAAAS VSNAVPTSFY 60 LSSHLSGSGI CYGVGESGGF HAPLSVMPLK SDGSLCIMEA LSRSQTEGIV TTSSPKLEDF 120 LGGATMETHQ YGSHERETMA LSLDSIYYHQ NADQETNRQH SLDLLQEPFR HQDQEFAVQT 180 HPYYSGLACQ GMYQSPLEEE TKDAQLADCD SQIPQMGEDA MPCFRNWVAR HYSTHSSLEQ 240 QMTSSMVDDG PASGSVGTMG CGDLQSLSLS MSPGSQSSCV TAPRQISPTA TECVAMETKK 300 RGPGKVGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV 360 YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYREEL EEMKNMSRQE YVAHLRRKSS 420 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 480 AVTNFDITRY DVERIMASNT LLAGELARRN KAIDSNNEGG DYNTPALTNG ETIQPEVNNG 540 NGSDRKMVLY QSPQQQPSVG AVESLEQKSM SNGSYRDPTF SMALQDLVGV DSVNSSQPMV 600 DESTKLGIHY SNPSSLVTSV SNSREGSPDK TGSSMLFAKP PLASKFISPA NGVSWFPSAQ 660 LRPAAISMAH LPLFAAWNDT * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007018428.2 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-159 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A061FFL0 | 0.0 | A0A061FFL0_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOY15653 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-156 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG034652t1 |
Entrez Gene | 18591931 |