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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026907t1 | ||||||||
Common Name | TCM_026907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 92435.5 Da PI: 6.0581 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Thecc1EG026907t1 5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP | |||||||
2 | START | 176.4 | 1.8e-55 | 155 | 362 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g+++ Thecc1EG026907t1 155 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIE 246 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++l Thecc1EG026907t1 247 LIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVL 339 ******************************************99999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + ++k++ a+l++ + Thecc1EG026907t1 340 RPLYESSKILAQKMTIAALRHIR 362 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-15 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.96E-16 | 5 | 65 | No hit | No description |
SuperFamily | SSF46689 | 1.92E-16 | 5 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.3E-16 | 5 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.36E-6 | 57 | 96 | No hit | No description |
PROSITE profile | PS50848 | 26.025 | 145 | 373 | IPR002913 | START domain |
CDD | cd08875 | 4.43E-73 | 149 | 365 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.7E-23 | 153 | 359 | IPR023393 | START-like domain |
SMART | SM00234 | 2.4E-52 | 154 | 364 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.61E-39 | 155 | 366 | No hit | No description |
Pfam | PF01852 | 5.9E-53 | 155 | 362 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.54E-8 | 402 | 487 | No hit | No description |
SuperFamily | SSF55961 | 1.54E-8 | 515 | 602 | No hit | No description |
Pfam | PF08670 | 7.8E-51 | 698 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR 60 EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ TGSATTTDNN 120 SCESVVMSGQ HQQQQNPTPQ HPQRDANSPA GLLAIAEETL AEFLSKATGT AVDWVQMIGM 180 KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RPSWFRDCRC LDVLSVIPTG 240 NGGTIELIYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLTSSTG GPTGPPTSSF 300 VRAEMLPSGF LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA QKMTIAALRH 360 IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FADDGWSLMG SDGVEDVTIM 420 INSSPGKFLG SQYNTSMFPS FGGGVLCAKA SMLLQNVPPA LLVRFLREHR SEWADYGVDT 480 YSAACLKASP YAVPCARPGG FPSSQVILPL AHTVEHEEFL EVVRLEGHAF TPEDVALARD 540 MYLLQLCSGI DENAVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLDPKT VTLTCQSSAD 600 GAGATRTLDL ASALEVGPGS NRLAGDGDPS NYNLRSVLTI AFQFTFENHL RDNVAAMARQ 660 YVRSVVGSVQ RVAMAIAPSR LSSNMEPKAL PGSPEALTLA RWICRSYRIH TGEELLRVDS 720 QAGDALLKQL WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA 780 GRKILCSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAIA WKVLNDNDAN HCLTFMFVNW 840 SFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017979204.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A061G8J9 | 0.0 | A0A061G8J9_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1 | ||||
STRING | EOY25496 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026907t1 |
Entrez Gene | 18595045 |