PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022481t1 | ||||||||
Common Name | TCM_022481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24698.6 Da PI: 5.1612 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.2e-15 | 50 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr+ ++g+Wv+e+r+p + r++lg+f ++ +Aa+a++aa+++l+g Thecc1EG022481t1 50 PVYKGVRR--RNGKWVSELREPI----KkSRIWLGTFSSPGMAARAYDAAALALKG 99 68****85..47*********72....35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-9 | 50 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-26 | 51 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.467 | 51 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-30 | 51 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.65E-16 | 52 | 109 | No hit | No description |
PRINTS | PR00367 | 8.2E-7 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-7 | 89 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEEQSVLSSK SHITPCSSSQ PELGSSSGQV EAKTQKRKAG RKKFQETRHP VYKGVRRRNG 60 KWVSELREPI KKSRIWLGTF SSPGMAARAY DAAALALKGD SASLNFPESA NALPRARSSS 120 IRDIQYAAME AAEAFGDIAK TPSPSPSLSS SSSLPSPPLP SLENSSENVQ GSSEKLFLDE 180 EEVFNMPGIL DSMAEGLILT PPAMQKGYYN WDDDVDDYME FTLWGD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027640.2 | 1e-164 | PREDICTED: dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A061EUS7 | 1e-164 | A0A061EUS7_THECC; Dehydration-responsive element-binding protein 1B, putative | ||||
STRING | EOY08142 | 1e-165 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-39 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022481t1 |
Entrez Gene | 18598175 |
Publications ? help Back to Top | |||
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