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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011797t1 | ||||||||
Common Name | TCM_011797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 390aa MW: 43988.2 Da PI: 8.5377 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.9 | 7.8e-11 | 68 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a+ k++g Thecc1EG011797t1 68 SRFRGVSRHRWTGRFEAHLWDkASWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 124 789******************77777786625555.********************98 PP | |||||||
2 | AP2 | 53.6 | 5.5e-17 | 167 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g Thecc1EG011797t1 167 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 218 79****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-8 | 68 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-14 | 68 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.60E-17 | 68 | 134 | No hit | No description |
PROSITE profile | PS51032 | 17.938 | 69 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 69 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-18 | 69 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-5 | 70 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 167 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.08E-23 | 167 | 228 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-17 | 167 | 228 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.492 | 168 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 168 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-24 | 168 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-5 | 208 | 228 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEMITAKSEM GPGRRRLCMA EGDNIETKCI KRRRRDPSTG SLGCYNQQGE QQQQQGDQPT 60 ATTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNPTQRKKG KQGAYDEEES AARAYDLAAI 120 KYWGTSTFTN FPVSDYEKEI EIMKAVTKEE YLASLRRRSS GFSRGVSRYR GVARHHHNGR 180 WEARIGRVFG NKYLYLGTYG TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGANQ 240 TTLVSQPMTA SNPFPTEQTP DVPLFNSNPF TVEALDSPRK QDVLQKKAPV SPCPKSSSPT 300 ALSLLLRSSM FNKLVEENLN ANFDVTEEND TKELLEIVDN NGVGDMFYNE IDHVPDALPG 360 LESEDGKLPL YNKTGQFTWN GALNLPLLH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 34 | RRRLCMAEGDNIETKCIKRRRR |
2 | 93 | 101 | PTQRKKGKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970512.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A061EIB6 | 0.0 | A0A061EIB6_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOY02049 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-73 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011797t1 |
Entrez Gene | 18610479 |
Publications ? help Back to Top | |||
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