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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010540t1 | ||||||||
Common Name | TCM_010540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 492aa MW: 53436.8 Da PI: 7.7737 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Thecc1EG010540t1 131 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 180 59*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.4E-32 | 131 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.27E-29 | 131 | 187 | No hit | No description |
PROSITE profile | PS51032 | 22.049 | 131 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 131 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.4E-11 | 131 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 131 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MLQRSSTFQV PSPLSPEPRN RPRKEPLSFF FIFLPVIPSY TFSVVLCVVS SAAGKIYPME 60 EAFRRLNGIT HVPDPDPRDC ITGNPKKCAA ATTTASTVTP TTTTTTTTTT TTLTTNKRSL 120 KENGGPGGTM RYRGVRRRPW GRYAAEIRDP QSKERRWLGT FDTAEEAACA YDCAARAMRG 180 IKARTNFVYP ATEPHSANDH FLPPFNFTKQ SQPPIRDLNT TRHQFGHSSN WSSFANPHVG 240 DFSGGSTPQR NASLNLLLLR DLLNSSSNSS LHAPPHSFVD QFPFINGTSS ASSSSTTIST 300 PSSLPGGALL NSSTNATLRA NDNMAGSFIG STMTLPLKGN NSSHTTGVPA MSTCQAECME 360 FFPQEPSDSG LLQEIIQGFL PKPMSRKSDD LARISNCAQD STVPPVSEMS FSQSLSGLKE 420 SKNEHLGFYI DYQGVPHQQF ESFNGITGSQ VVPYGNEVAV NHLQLGEDCM LDDIFQYPDL 480 LGALAARVQN A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 131 | 198 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044810.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | A0A061E8G4 | 0.0 | A0A061E8G4_THECC; DORNROSCHEN-like, putative | ||||
STRING | EOY00642 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-13 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010540t1 |
Entrez Gene | 18609569 |
Publications ? help Back to Top | |||
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