PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004052t1 | ||||||||
Common Name | TCM_004052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26697.8 Da PI: 5.4404 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 103 | 151 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 y+GVr ++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+++ Thecc1EG004052t1 103 SYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAALST 151 69*******.**********422...25**********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-17 | 102 | 162 | No hit | No description |
SMART | SM00380 | 3.6E-34 | 103 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-11 | 103 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 103 | 163 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-29 | 103 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 103 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MISVSLQDMD SSFLESLNSE FQLEYGQDLL ESFSPNNELF LDQDFLSFDI IDSKELPPQD 60 TTLYHHGSRE SSISSCGLII DEEHVVSSAK KREEQQQPKG EKSYRGVRKR PWGKYAAEIR 120 DSTRHGIRVW LGTFDSAEAA ALAYDQAALS TQGPKAVLNF PVERVRESLR NMNYYCKDGA 180 SPAVELKQRN YVQRKSMARK NKKKQSQAKN VVVLEDLGSE YLEELLSSSQ ITSSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-26 | 104 | 163 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975963.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 9e-56 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A061DWS9 | 1e-173 | A0A061DWS9_THECC; Ethylene response factor 1, putative | ||||
STRING | EOX94468 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22431 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-35 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004052t1 |
Entrez Gene | 18613152 |
Publications ? help Back to Top | |||
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