PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000844t1 | ||||||||
Common Name | TCM_000844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 673aa MW: 74658.8 Da PI: 6.9241 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 323 | 382 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Thecc1EG000844t1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 382 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 427 | 476 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Thecc1EG000844t1 427 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 476 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-21 | 323 | 390 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 323 | 392 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-13 | 323 | 382 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 324 | 390 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 324 | 396 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 324 | 391 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 325 | 336 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-17 | 425 | 485 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.18E-24 | 425 | 486 | No hit | No description |
PROSITE profile | PS51032 | 19.177 | 426 | 484 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 426 | 490 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 426 | 484 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-9 | 427 | 476 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 466 | 486 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MKSMSNDDNN NNNTNWLGFS LSPHMKMEVT NQDPRHQTQS ASVSAAAAGV TTAVPSSFFH 60 SPSHLNYGLY YGVEGENGGL YSHFSAMPLK SDGSLCLMEA LGRSQPQAMV PTSTPKLEDF 120 FGAATMGSHH YESGDREAMA LSLDSMYYHH NPDHEHNNQT CLDHLQQSSR QQHQQQIQVQ 180 QYQYYSGYRN QELLLGEEAK ETHVTDCNLQ LPTMADDAAP GMKNWVLRNY STDHAMPQKM 240 IGCMGDNGAE SGSIGAMAYG DLQSLSLSMS PGSQSSCVTG SQQISPSATD YAAMDTKKRG 300 PENVDQKQIV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL 360 GGYDMEEKAA RAYDLAALKY WGPSTHINFP LENYQKELEE MKNMTRQEYV AHLRRKSSGF 420 SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV 480 TNFDITRYDV ERIMASNTLL AGELARRNKE IGPGNEAVSR NLLTDNSSGD TNISPKNNES 540 QPDWKMALYQ SSQQLEQKQP NMIEYKTQTF SLAPENVVAI DTISSGQREV DDSSKMGTHH 600 LSNASSLVTS LSSSREGSPD RSSLPMPFAI PPPASKLFTG SATTVNSWIP SAQLRPALSM 660 PHMPVFAAWT DS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980636.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-180 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A061DIQ6 | 0.0 | A0A061DIQ6_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOX91761 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-134 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000844t1 |
Entrez Gene | 18611333 |