PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35423-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 409aa    MW: 43971.3 Da    PI: 6.0141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35423-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12215259554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  TRIUR3_35423-P1 215 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 259
                      8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15211280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.18E-13212263No hitNo description
Gene3DG3DSA:4.10.280.107.0E-16214279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10215259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDSSSWIHGY YGPSSGAGGG NSGFMCGYAA SMQMNMEDEP AAYIVPAGDG VAVGMQQSVL  60
DEFDFLSSHH AGGCSFPSSS STSSSFRSAS LSCSPEISSA HALATPAAGL QFPEVSSHVP  120
PLVLPCDDDY HQYILNFQDT AAMEPGVVPA SAFSRYARHL GARRRPKPAC GQKMFKKSMS  180
VLVKMQAAMR YSHQQHHFQQ ASPEAELSSV NQLQHMISER KRREKLNDSF QALKTVLPPG  240
SKKDKTSILI TAREYVNSLK SKVCDLEEKN KALQAQLAQC ARDAGVEEDD AEKVEIQITR  300
VAADREDGTT TSEVCTVKIA ARPAHGNTMD VVLRTLQCLN DQMGEDDVSL VAMSTSDGDA  360
GNGLTGAFLT MQLKSASGAK WEEEMSKAVA ACPSADRHGD VAGWPRHPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERKRRE
2219224RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A446N6470.0A0A446N647_TRITD; Uncharacterized protein
TrEMBLT1NX030.0T1NX03_TRIUA; Uncharacterized protein
STRINGTRIUR3_35423-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-28bHLH family protein