PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_31797-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 609aa MW: 64451.4 Da PI: 9.9079 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.3 | 2e-25 | 346 | 397 | 9 | 59 |
EEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 9 KYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 KYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ TRIUR3_31797-P1 346 KYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGTHNHP 397 9********************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.31E-21 | 346 | 399 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-26 | 346 | 398 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.925 | 346 | 399 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-21 | 346 | 397 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.2E-25 | 346 | 399 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MEPKPSQLPS VSASPERAIR EALDLHGQGP PRWRRRRRRT ARPGRLAAAA RLPELAITGA 60 VPQEHGGGRR RRGAGAKKNM KKSRASAGAD AEDHKDQASA AGLAIKKEDL TINLLPGNNT 120 RSDRSMVVDD DGASRADEDR NGRNTGELAA MQAELSRMNE ENQRLRGMLT QVNSSYHALQ 180 MHLVALMQQR TQMPPVQPQQ PPTHEDGKNE SAIVPRQFLG LGPSGASADV AEEPSNSSTE 240 VGSPRRSSSN GNEDPERGDN PDGPSTAGWL PGRGMSQQQQ QQLGAAAKGH DQQAQEATMR 300 KARVSVRARS EAPIVRLLLL LLDHFLVFAL AILSSPCVWI VLTLPKYGQK MAKGNPCPRA 360 YYRCTMATGC PVRKQVQRCA EDRTILITTY EGTHNHPLPP AAMAMASTTS AAASMLLSGS 420 MPSADGAGLM SSNFLARTVL PCSSSMATIS ASAPFPTVTL DLTHAPPGAP NAMPLNVARP 480 HAPGQFHVPM PGGGMAPAFA MPPHMLYNQS KFSGLQMSSD SVDAGQFAQP RPPMGLPGQL 540 SDTVSAAAAA ITADPNFTVA LAAAISSIMA GQHAAGNSNA NNSNNNTSNN NVTTTSNNTT 600 SNNTNSETQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-17 | 346 | 401 | 22 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 41 | RRRRRRTAR |
2 | 34 | 39 | RRRRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357452 | 0.0 | AK357452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053M21. | |||
GenBank | AK364800 | 0.0 | AK364800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186071.1 | 0.0 | WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-114 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | M7Z5D4 | 0.0 | M7Z5D4_TRIUA; WRKY transcription factor 6 | ||||
STRING | TRIUR3_31797-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-100 | WRKY family protein |