PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30073-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13288.4 Da    PI: 10.2911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30073-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.8e-281160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ +nrqv fskRr g++KKA+ELS LCda+va+++fs+ gklyeyss
  TRIUR3_30073-P1 11 RIEDRTNRQVCFSKRRSGLFKKAFELSLLCDADVALLVFSPAGKLYEYSS 60
                     8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.422262IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-34261IPR002100Transcription factor, MADS-box
CDDcd002653.91E-35361No hitNo description
SuperFamilySSF554557.46E-28474IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-28424IPR002100Transcription factor, MADS-box
PfamPF003194.0E-271158IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-282439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-283960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MARRGRVELR RIEDRTNRQV CFSKRRSGLF KKAFELSLLC DADVALLVFS PAGKLYEYSS  60
SRCTLAAAHF FFTCSSKPVL WIRLVESADR GVRSVDFLRF PLSLTVADGC SAGRTPYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-17461259Myocyte-specific enhancer factor 2A
3mu6_B3e-17461259Myocyte-specific enhancer factor 2A
3mu6_C3e-17461259Myocyte-specific enhancer factor 2A
3mu6_D3e-17461259Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-79HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181347.11e-32MADS-box transcription factor 51-like
SwissprotQ9XJ619e-30MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A446P0R04e-79A0A446P0R0_TRITD; Uncharacterized protein
TrEMBLM7XDP34e-79M7XDP3_TRIUA; Agamous-like MADS-box protein AGL14
STRINGTRIUR3_30073-P17e-80(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-26AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]