PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26547-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 923aa    MW: 100282 Da    PI: 7.4656
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26547-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1895152457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  TRIUR3_26547-P1  95 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 152
                      6789****************************************************97 PP
2START160.81e-502454504204
                      HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
            START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                      ee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g+++l++
  TRIUR3_26547-P1 245 EETLTAFLSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngGTIELIY 337
                      68899***************************************************.8888888888*************************** PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                      ++++a+++l++ Rdf+++Ry+  l +g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l+
  TRIUR3_26547-P1 338 MQTYAPTTLAApRDFWTLRYTCGLDDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLY 431
                      *********999****************************9999999*********************************************** PP

                      HHHHHHHHHHHHHHTXXXX CS
            START 186 ksglaegaktwvatlqrqc 204
                      +s  + ++k++ a+l++ +
  TRIUR3_26547-P1 432 ESPKIVAQKMTIAALRHIR 450
                      **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.15989153IPR001356Homeobox domain
SMARTSM003895.9E-1591157IPR001356Homeobox domain
SuperFamilySSF466898.13E-1694155IPR009057Homeodomain-like
CDDcd000866.09E-1694154No hitNo description
PfamPF000466.1E-1695152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1896152IPR009057Homeodomain-like
CDDcd146867.72E-6146185No hitNo description
PROSITE profilePS5084823.819233452IPR002913START domain
CDDcd088753.28E-67237453No hitNo description
Gene3DG3DSA:3.30.530.205.8E-23242425IPR023393START-like domain
SMARTSM002341.3E-42242452IPR002913START domain
SuperFamilySSF559618.65E-38243453No hitNo description
PfamPF018521.7E-48245450IPR002913START domain
PfamPF086702.5E-47778922IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MGEDGRGGDA GGAGRGIGAM KTPARDEEAA RKKTFDVDKG AGTLFAGHMI VIDRVACVRP  60
AQRFGRQSVR KRFPFGNPQK TNKKREHVSV DTGKYVRYTP EQVEALERVY NECPKPSSLR  120
RQQIIRDCPI LCNIEPKQIK VWFQNRRCRE KQRKESSRMQ TVNRKLTAMN KLLMEENDRL  180
QKQVSRLVYE NASVKSLKTK IHKASAATTD TSCESVVTSG QQQALAAPRP QRDANNPAGL  240
LAIGEETLTA FLSKATGTAV EWVQMMGMKP GPDSIGIIAV SHNCIGVAAR ACGLVSLEPT  300
KVAEILKDRP SWYRDCRCVD ILHVFPTGNG GTIELIYMQT YAPTTLAAPR DFWTLRYTCG  360
LDDGSLVICE RSLTQSTGGP SGPNTPGFIR AEVLPSGYLI RPCEGGGSMI HIVDHVDLDA  420
WSVPEVLRPL YESPKIVAQK MTIAALRHIR QIAHESSGEI PYGAGRQPAV LRTFSQRLSR  480
GFNDAVSGFP DDGWSLLTSD GAEDITITVN SSPNKLVGSH ISPSPLFSAI GGGILCAKAS  540
MLVQDVPPAL LVRFLREHRS EWADPGVDAY SAASLRASPY AVPGLRAGGF MGNQVILPLA  600
HTLEHEEFLE VLRLEGHGFS HDEVLLARDM YLLQLCSGVD ENASGACAQL VFAPIDESFA  660
DDAPLLPSGF RVIPLDTKTD VPSATRTLDL ASALEVGSGG ALRGSGDSPG GCSTRSVLTI  720
AFQFSFENHL RESVAAMARQ YVRAVMASVQ RVAMAIAPSR LGSQIQLKHP PGSPEALTLA  780
SWIGRSYRAH TGEEIRWSDT EEADSPLKLL WNHSDAILCC SLKPAPMFTF GNNAALDMLE  840
TTLVNLQDIS LEAILDDEGR KALCAEFSKV MQQGFAYLPG GVCKSSMGRQ ASYEQAVAWK  900
VVGDDVAGAP HCLAFMFVNW TFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLM7ZDQ60.0M7ZDQ6_TRIUA; Homeobox-leucine zipper protein HOX33
STRINGTRIUR3_26547-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]