PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25943-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 165aa    MW: 18411.7 Da    PI: 8.4863
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25943-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.5e-34121032102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d+++++++sw   gn+fvv+d + f+  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+kell+
  TRIUR3_25943-P1  12 FLNKTYEVVDDHSTDTIVSWGVAGNTFVVWDAHAFSMVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKELLK 96 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r++ 
  TRIUR3_25943-P1  97 TIRRRRP 103
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-548101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-328101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDGLGEAGPT PFLNKTYEVV DDHSTDTIVS WGVAGNTFVV WDAHAFSMVL LPRYFKHSNF  60
SSFVRQLNTY GFRKVDPDRW EFAAEGFLRG QKELLKTIRR RRPQSSPAGT PALLQQGQQQ  120
GACLEVGHFG PEGENSKGAV SEAYCPDLRC TPQDGMRRKT GWGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-25310117129Heat shock factor protein 1
5d5v_B4e-25310117129Heat shock factor protein 1
5d5v_D4e-25310117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570221e-148AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBankAK3578551e-148AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBankAK3583801e-148AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBankAK3770821e-148AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200656.14e-82heat stress transcription factor A-2a-like
RefseqXP_020200657.14e-82heat stress transcription factor A-2a-like
SwissprotQ84MN73e-63HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLM8AYV31e-121M8AYV3_TRIUA; Heat stress transcription factor A-2a
STRINGTRIUR3_25943-P11e-121(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-56heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]