PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_24688-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 314aa MW: 35184 Da PI: 9.1133

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_24688-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.5e-10	24	46	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIUR3_24688-P1 24 KECPYYMRIGSCKFATNCRFHHP 46 68********************9 PP
2	zf-CCCH	20	1.2e-06	171	194	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIUR3_24688-P1 171 LECQHFVKSGFCKFKAKCKYHHPR 194 58********************96 PP
3	zf-CCCH	20.1	1.1e-06	216	234	3	21
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 ++ C ++ r+G Ck+G+ C TRIUR3_24688-P1 216 QPVCTYYERYGVCKFGPAC 234 789**************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.164	20	48	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-4	20	47	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-6	24	46	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	24	48	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-4	26	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.263	167	195	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	167	194	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	171	195	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-4	173	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.535	213	234	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8	214	236	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSNKGNMKGR CAKSALTSDR EGGKECPYYM RIGSCKFATN CRFHHPDPSN VVSRDPMLEH 60 ENGDIPQQNV QASSQLNVPV WSADQRALNE HCAPFLAPAS SYSAGMIPPR GMYPSPEWSG 120 YHQVPLGPYY PPGIAFHHFP TPVNHPMYRG ADVPGHQELP SDEYPERPGQ LECQHFVKSG 180 FCKFKAKCKY HHPRSLVPPP TAGALSPLGL PLRSDQPVCT YYERYGVCKF GPACIKKATK 240 RTVSFQNYGF VKSETDIKAR ERRFKFCFLN AEASTSMSPS RNDNFSSIIS DNYIHARSAK 300 GLRKTCININ LKEF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370517	0.0	AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179364.1	1e-155	zinc finger CCCH domain-containing protein 65-like isoform X1
Swissprot	Q2QTY2	1e-117	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	M7YAZ7	0.0	M7YAZ7_TRIUA; Zinc finger CCCH domain-containing protein 65
STRING	TRIUR3_24688-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-42	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]