PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20985-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 106aa    MW: 11942.8 Da    PI: 10.1629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20985-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.8e-261160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv f+kRr+g++KKA+EL vLCdaev++++fs+ g+lyey+s
  TRIUR3_20985-P1 11 RIEDRTSRQVRFAKRRAGLFKKAFELAVLCDAEVSLLVFSPAGRLYEYAS 60
                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-32261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.086262IPR002100Transcription factor, MADS-box
CDDcd002651.52E-34365No hitNo description
SuperFamilySSF554558.11E-27471IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-27424IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MARRGRVELR RIEDRTSRQV RFAKRRAGLF KKAFELAVLC DAEVSLLVFS PAGRLYEYAS  60
SSSRNEVATI ATDDAFNKEM MAKMSPTSAM AEVDMVFTRI CATPNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-17461360Myocyte-specific enhancer factor 2B
1tqe_Q2e-17461360Myocyte-specific enhancer factor 2B
1tqe_R2e-17461360Myocyte-specific enhancer factor 2B
1tqe_S2e-17461360Myocyte-specific enhancer factor 2B
6c9l_A2e-17461360Myocyte-specific enhancer factor 2B
6c9l_B2e-17461360Myocyte-specific enhancer factor 2B
6c9l_C2e-17461360Myocyte-specific enhancer factor 2B
6c9l_D2e-17461360Myocyte-specific enhancer factor 2B
6c9l_E2e-17461360Myocyte-specific enhancer factor 2B
6c9l_F2e-17461360Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2486152e-97JN248615.1 Triticum aestivum type I MADS-box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147090.11e-36MADS-box transcription factor 51-like
SwissprotQ9XJ612e-32MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLM7YI201e-70M7YI20_TRIUA; MADS-box transcription factor 56
STRINGTRIUR3_20985-P12e-71(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-27AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]