PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_06950-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 1365aa MW: 151924 Da PI: 9.2645

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_06950-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	41	76	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W+++a + Rt ++ TRIUR3_06950-P1 41 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 76 6***************99.****999.9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-9	33	85	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-6	41	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	41	80	IPR009057	Homeodomain-like
CDD	cd00167	5.22E-4	42	76	No hit	No description
Pfam	PF06584	1.6E-33	681	781	IPR033471	DIRP domain
SMART	SM01135	6.4E-58	681	782	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1365 aa Download sequence Send to blast
MAAPNYMPVI TVGYIISITL LTIDQRNIYL QKKKLSDLGS QWSKDELERF YAAYRKYGKD 60 WRKVAGAVHD RTSDMVEALY NMNRAYLSLP EGTATAAGLI AMMTDHYNIL DGSNSDHESN 120 GSPKTSRKPQ KRGRAKLQSV SKASDTRYPD LLQSQPASSS YGCLSLLKKK RSGASVSLAG 180 AEVSSNNGAP FTFLEQRKTG LRSETCLDLF VGNKPRAVGK RTPRVPVASM YRDDKIGPSN 240 RQAKPDANNG DEEGALAALA LAEVCQRGSP QVSQTSGRSS GQMFLSPGKS IDRKNADSEM 300 GSSKMHGFQV DADYPEGSLG SREAETGDYP KDASYFLNNE GSASGKSKPK VKRSQKRRKK 360 AAHKTDDQFE DDREACSGTE EGCSSRKAKD ISDLDVFGSK GSWPSNKSNK RSRQLFFGDE 420 LSALDALHTL ADISVNILQP SSIAESESSA QFKDGSKDNE SDDKPSVPAA VSLFDKKDKP 480 RKTKKIKRQS EIASNEVVTR KKARLSKDHH HDGSTSDVKQ DDCKCGVKME KKKRKSSTLK 540 ISKDEKNTLK DSEKTEASAE EGKVSSNKGR HTHVSPVSKQ NKSKAQESSP AHADFGKEAM 600 DTVDMTENAI TQQSDSASKS KSRRKLGILK ALAPESKPAE GADDSCDNVS YPVNNVTELK 660 DKLSHCLSSR FLRRWCMSEW FYSAIDYPWF AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS 720 SLGKPRRLSK QFLQEEREKL SQYRESVRQH YAELQSGVRE GLPTDLARPL AVGQRVIACH 780 PKTRELHDGG VLTVDRSRCR VQFDRPELGV EFVMVAVTDP NMVIVDEIVT LQDIDCMPLH 840 PLENFPESLR RQNIVNKYYS SFSEVKFEDR SKEYGGGGAP RFIPNGDAFD SIAQAKTTAN 900 EATVAAQQAM YGQPCTLSQI QEREADIRAL AELSRALDKK ASLCLEFYLM LWDIYSTQEA 960 LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR DSNDHVASAL LCLRQRNTFH 1020 GQPTQSYPNK SMENGGASNR TPDPSSNLFG YINQESGSQV MEIIETSRSK AKTMVDVAVQ 1080 AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP PDSGQANSDN SASGRFDPAA 1140 ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT EKQYHPAEVA HILDSALSRL 1200 QPCSSQNDTW LGDAPLATQY PSLYRIVQRR EALVATVLQS IPLNIQFRRV LVGDRWKAWL 1260 HLVRRLMGVQ LNPQPDQLWW KLTRSGEFTV KSMYIDILNS SVIPSFKEDW KVKVLFRATA 1320 LIRMWSLLTP TEARKRLVTG SVRWEMVARD IFNRFGWRSC NRIGD

Sequence ? help Back to Top

Protein Sequence Length: 1365 aa Download sequence Send to blast

MAAPNYMPVI TVGYIISITL LTIDQRNIYL QKKKLSDLGS QWSKDELERF YAAYRKYGKD  60
WRKVAGAVHD RTSDMVEALY NMNRAYLSLP EGTATAAGLI AMMTDHYNIL DGSNSDHESN  120
GSPKTSRKPQ KRGRAKLQSV SKASDTRYPD LLQSQPASSS YGCLSLLKKK RSGASVSLAG  180
AEVSSNNGAP FTFLEQRKTG LRSETCLDLF VGNKPRAVGK RTPRVPVASM YRDDKIGPSN  240
RQAKPDANNG DEEGALAALA LAEVCQRGSP QVSQTSGRSS GQMFLSPGKS IDRKNADSEM  300
GSSKMHGFQV DADYPEGSLG SREAETGDYP KDASYFLNNE GSASGKSKPK VKRSQKRRKK  360
AAHKTDDQFE DDREACSGTE EGCSSRKAKD ISDLDVFGSK GSWPSNKSNK RSRQLFFGDE  420
LSALDALHTL ADISVNILQP SSIAESESSA QFKDGSKDNE SDDKPSVPAA VSLFDKKDKP  480
RKTKKIKRQS EIASNEVVTR KKARLSKDHH HDGSTSDVKQ DDCKCGVKME KKKRKSSTLK  540
ISKDEKNTLK DSEKTEASAE EGKVSSNKGR HTHVSPVSKQ NKSKAQESSP AHADFGKEAM  600
DTVDMTENAI TQQSDSASKS KSRRKLGILK ALAPESKPAE GADDSCDNVS YPVNNVTELK  660
DKLSHCLSSR FLRRWCMSEW FYSAIDYPWF AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS  720
SLGKPRRLSK QFLQEEREKL SQYRESVRQH YAELQSGVRE GLPTDLARPL AVGQRVIACH  780
PKTRELHDGG VLTVDRSRCR VQFDRPELGV EFVMVAVTDP NMVIVDEIVT LQDIDCMPLH  840
PLENFPESLR RQNIVNKYYS SFSEVKFEDR SKEYGGGGAP RFIPNGDAFD SIAQAKTTAN  900
EATVAAQQAM YGQPCTLSQI QEREADIRAL AELSRALDKK ASLCLEFYLM LWDIYSTQEA  960
LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR DSNDHVASAL LCLRQRNTFH  1020
GQPTQSYPNK SMENGGASNR TPDPSSNLFG YINQESGSQV MEIIETSRSK AKTMVDVAVQ  1080
AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP PDSGQANSDN SASGRFDPAA  1140
ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT EKQYHPAEVA HILDSALSRL  1200
QPCSSQNDTW LGDAPLATQY PSLYRIVQRR EALVATVLQS IPLNIQFRRV LVGDRWKAWL  1260
HLVRRLMGVQ LNPQPDQLWW KLTRSGEFTV KSMYIDILNS SVIPSFKEDW KVKVLFRATA  1320
LIRMWSLLTP TEARKRLVTG SVRWEMVARD IFNRFGWRSC NRIGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	359	KPKVKRSQKRRKK
2	350	356	VKRSQKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365864	0.0	AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183561.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	M7ZWV8	0.0	M7ZWV8_TRIUA; Protein ALWAYS EARLY 3
STRING	TRIUR3_06950-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding