PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF057600060CFD_t1 | ||||||||
Common Name | TRAES_3BF057600060CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 261aa MW: 29203.4 Da PI: 6.1041 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.5e-21 | 89 | 149 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ TRAES3BF057600060CFD_t1 89 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 149 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.2 | 1.8e-33 | 88 | 151 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq TRAES3BF057600060CFD_t1 88 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 151 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 83 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 87 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-18 | 88 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.8E-19 | 89 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.57E-13 | 89 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEWDKASAAA AAGEPAEERG EALGYVKVMT DEQMEVLRKQ ISIYATICEQ LVEMHRALTA 60 HQDSIAGMRL GNLYCDPLMV HGGHKITARQ RWTPTQMQLQ ILESIFDQGN GTPSKQKIKD 120 ITAELSQHGQ ISETNVYNWF QNRRARSKRK QAASSLPSNT ESEAEGDEDS PTDKKPRSDG 180 SQQQSMAARA HNPERISEMH RHFDAAEREQ VRGPMYGSGN DSGARPSGGL GQMSFYENVM 240 SNPRIDQFFQ YRTGESFDMS G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363822 | 0.0 | AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08. | |||
GenBank | AK365419 | 0.0 | AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06. | |||
GenBank | AK365714 | 0.0 | AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188039.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-124 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A077S168 | 0.0 | A0A077S168_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q3I0 | 0.0 | A0A446Q3I0_TRITD; Uncharacterized protein | ||||
STRING | EMT31234 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-62 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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