PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF051200070CFD_t1
Common NameTRAES_3BF051200070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 293aa    MW: 31407.2 Da    PI: 4.2713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF051200070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2091142156
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ +++a+ +l+g+
  TRAES3BF051200070CFD_t1  91 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRGA 142
                              69********.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.79E-2991151No hitNo description
PfamPF008472.2E-1291141IPR001471AP2/ERF domain
SMARTSM003806.0E-3692155IPR001471AP2/ERF domain
PROSITE profilePS5103222.78792149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2992150IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2292150IPR016177DNA-binding domain
PRINTSPR003672.0E-1093104IPR001471AP2/ERF domain
PRINTSPR003672.0E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSRSRTVRIY WDDPDVTDSS SEDDEGCAAR RVGRMVRELP PAPAPLVQAA AAAPSPEQCS  60
AGDDDLPRRV GGCTRARKRL AKGGGSAAQS TKFRGVRRRP WGKYAAEIRD PWRGVRVWLG  120
TFDTAEEAAR VYDNAAIQLR GATATTNFST SSTNSEGAQE DLTAAGYESG AESSQAVSSP  180
TSVLRKVPSM SSLAEDRGDS EACQGDAAAG SSLSVPEELG EFVPFEDAPV YSSSSFWDFE  240
PQSGFLYAEP SSAEEASWDA SAGGEPWAAP VQENDYFQDL RDLFPLNQLP AIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2283148571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184683.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A077RR270.0A0A077RR27_WHEAT; Uncharacterized protein
TrEMBLA0A446PU750.0A0A446PU75_TRITD; Uncharacterized protein
STRINGMLOC_10225.11e-154(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-26cytokinin response factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]