PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF017100030CFD_t1
Common NameTRAES_3BF017100030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 351aa    MW: 38456.6 Da    PI: 4.3869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF017100030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19121170255
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ kl+g
  TRAES3BF017100030CFD_t1 121 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 170
                              69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-12121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-29121180IPR001471AP2/ERF domain
PROSITE profilePS5103223.393121178IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-21121179IPR016177DNA-binding domain
SMARTSM003801.7E-35121184IPR001471AP2/ERF domain
PRINTSPR003674.5E-10122133IPR001471AP2/ERF domain
CDDcd000185.54E-25129180No hitNo description
PRINTSPR003674.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MWPMEEEFFM AVKRTEHVEV TSRSVAASAK GKEAFGGVEQ PKMVRVFCDD FDATDSSSDE  60
EEGERRRVKR YVQEIRLQPA VQVKVEESAP VAKAASATAT TRPRVMVPVR KRKAEAGGER  120
RFRGVRRRPW GKYAAEIRDP WRRVRVWLGT FDTAEEAAKV YDSAAIKLRG PDATVNFQQS  180
EDGEDMEVPT EVAERLPQPP AGSKNGSSSA TSYDSCEESH VAAASPTSVL RSFPQSTLAA  240
AVDDDASKKP SSSSSTTETD ESSGVFGCSF SGDDFAGELA PLYTDFDLLS DFAEPPMDFL  300
SNLPEPAFTF SSDCSLSAYN PCPPSPAALQ QADEFFEDIT DLFQIDPLPV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191211771471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111128RKAEAGGERRFRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198992.10.0ethylene-responsive transcription factor CRF1-like
TrEMBLA0A446PKB30.0A0A446PKB3_TRITD; Uncharacterized protein
TrEMBLW5CUU20.0W5CUU2_WHEAT; Uncharacterized protein
STRINGTraes_3B_4E90802BA1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.14e-22cytokinin response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]