PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0058200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26322.1 Da PI: 10.0577 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 71.8 | 1.2e-22 | 108 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeIrdp+ krkr++lg+f+taeeAa+a++ a+++l+g Spipo6G0058200 108 KFIGVRQRP-WGRWVAEIRDPTR-SsKRKRVWLGTFDTAEEAAAAYDSAALRLKG 160 789******.**********854.3478*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.18E-19 | 107 | 170 | No hit | No description |
Pfam | PF00847 | 7.3E-17 | 108 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 108 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 108 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 108 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.118 | 108 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPVKSSPQDH LARKTSPSET DSGRSEISAG GSPPFQRRTV RIIYNDADAT DSSSSDDGEE 60 TGSEVRCRRM KRRVTEIDIG NSATESRRKR QTSKRRTSHP LVDESQQKFI GVRQRPWGRW 120 VAEIRDPTRS SKRKRVWLGT FDTAEEAAAA YDSAALRLKG PKAATNFPSS KKPTSTISDD 180 KTGNNGSPCF STISSSTAVT TSTTYTKFAT LPIKSQDDLA CEANDALEHP HIESDKKLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 102 | 177 | 8 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 89 | KRRVTEIDIGNSATESRRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252020.1 | 4e-40 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A1D1Z5T5 | 2e-59 | A0A1D1Z5T5_9ARAE; Pathogenesis-related genes transcriptional activator PTI6 (Fragment) | ||||
STRING | XP_010252020.1 | 2e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15640 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-18 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0058200 |