 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Spipo4G0113500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 223aa MW: 25554.1 Da PI: 8.4652 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Spipo4G0113500 | genome | MIPS/IBIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.4 | 3.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kR+ngi+KKA+E+SvLC+a+v +++fss+gk+ e++s
Spipo4G0113500 9 KRIENSTNRQVTFTKRKNGIIKKAKEISVLCNAQVYLVLFSSSGKMAEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 51.5 | 4.4e-18 | 72 | 133 | 2 | 63 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63
qk++g++ ++ak+e+l+ e++++kke++++q e+R+l+Ged+ +Ls eL Le L+++l
Spipo4G0113500 72 QKYTGNRIWDAKHERLNAEIDQIKKENDSMQIELRRLKGEDIAPLSPYELIPLEATLQRGLD 133
7889999*****************************************************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 4.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.67 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.13E-35 | 2 | 80 | No hit | No description |
| SuperFamily | SSF55455 | 1.44E-33 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.9E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.3E-10 | 83 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 11.195 | 84 | 181 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSTNRQVT FTKRKNGIIK KAKEISVLCN AQVYLVLFSS SGKMAEFCSD 60
NTTLSRMLEQ HQKYTGNRIW DAKHERLNAE IDQIKKENDS MQIELRRLKG EDIAPLSPYE 120
LIPLEATLQR GLDSPLEFEE TNPDAPFSSQ MEFLKKLKKN ERLLEAENKE LGMILEEHGG 180
ASRGGLRELH QYHRHPQESS YSFQTPFSFC GQPIRRGLDE GK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
