PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0071500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 928aa    MW: 102056 Da    PI: 6.512
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0071500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.43.3e-22132180149
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                     +CqvegC adlseak+yhrrhkvCe+h+ka+ ++v ++eqrfCqqCs  
  Spipo3G0071500 132 VCQVEGCGADLSEAKDYHRRHKVCEMHAKASRAVVGNVEQRFCQQCSSC 180
                     6*********************************************975 PP
2SBP49.11.5e-152202514778
                     SSEEETTT--SS--S-STTTT-------S--- CS
             SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     srfh l+efDeekrsCrrrLa+hn+rrrk+q+
  Spipo3G0071500 220 SRFHLLQEFDEEKRSCRRRLAGHNRRRRKSQP 251
                     9****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-27130176IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.888130249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-21131189IPR004333Transcription factor, SBP-box
PfamPF031103.5E-16133179IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-27219236IPR004333Transcription factor, SBP-box
PfamPF031102.6E-7220248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-12220255IPR004333Transcription factor, SBP-box
CDDcd002041.69E-7764900No hitNo description
Gene3DG3DSA:1.25.40.201.6E-5790898IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-6790899IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MTRAGKNVEW DLNDWSWDGH LLVATPFNAS PSNCGNKQLF PAPAVGELPN CSLSCSGDSE  60
PGSSDRGRSE SEKRRRELAM VDEDEPDDVA GSLALKLGGR VYSVTEPAGP ADWEGKNGKR  120
SKVQADSLIR AVCQVEGCGA DLSEAKDYHR RHKVCEMHAK ASRAVVGNVE QRFCQQCSSC  180
LKQDQPDQED DGDVVDDGGK PRKREQWEIR NRAYHVLCLS RFHLLQEFDE EKRSCRRRLA  240
GHNRRRRKSQ PDAVVNGTSQ MDDRTISYLL ISLLRILTNL HSGGSEQLKD QELLSHLLNN  300
LASLSGSVDR NMLTGLFQSS QGRENLRASA GTSDAVHTSV EMPQKGSTVE ASLGEQAVPC  360
NRPTTLKHVQ EAIPAEKYEL SPLKQILPNM EGARIRSFDL NDVCSDGPES TEEPDRLFIP  420
ECRQQDSPYH LPWAAQKSDR TSPSKASGFS DSASARPLFT LNGGVQSRTD RMVFKLFGKD  480
PSDFPLVLRR QILDWLSNSP TDMEGYIRPG CLILTIYLRL AEPTWEELSH NLKPSLEKLL  540
ALAGDDFWKT GWVYARIQHQ IAFVLNGCVV LDTPALLDAH SHCEILSVSP IAVSASEGVR  600
FTVKGVNLAR STRLLCAFDG KYLAQETTQA LPSSDGASAG GSQRVQCLHF SCSVPSGTGR  660
GFVEVEDHAL RSSFFPFIVA EEPVAAEIRT LEGIIEESDG EMAAGAEARK RALDFLHEMG  720
WLLRKAHLRS CSQGVEEDSD AGVYPLARFR QLMEFSMGQS WRAVVKKLLD VLFSGAVVVD  780
SNSLELALSE MSLLHSAVQR NRRPIVELLL SYVPAAPEGA QSEVARRRHG FLFRPDMAGP  840
FDVTPLHIAA SRADAEGVLD ALTDDPGKVG IGAWAGARDS SGFTPEDYAR LRGYESYTRL  900
VQRKMRGAPG GPPPRHRRPS GLGRPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-241322481084squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810336.10.0squamosa promoter-binding-like protein 6
TrEMBLA0A1D1YRL60.0A0A1D1YRL6_9ARAE; Squamosa promoter-binding-like protein 6
STRINGXP_008810336.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-180squamosa promoter binding protein-like 1