PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0115300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 205aa    MW: 21621.7 Da    PI: 10.8251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0115300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-191863247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +i+n   r v+fskRr g++KKA EL +LC+ae+a ++fs++gk +
  Spipo2G0115300 18 KISNGDARMVSFSKRRSGLFKKAAELAILCGAEIAAVVFSPSGKPF 63
                    699****************************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-29968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.969969IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-231075IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-181131IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAAARNARAG RRRISLQKIS NGDARMVSFS KRRSGLFKKA AELAILCGAE IAAVVFSPSG  60
KPFSFGHPSV EAVANPLLGE NADGGATGSQ QEAPAAGDFA TSGLQLSHEE VCGNFEAQVR  120
KRETVEAALT GVWARRNVNV AALRLEQLSR VKSSMEALRR EITRRAEELR VSEFSLAPMA  180
PAPPPAPSAP RPPAGVPLLL TLDI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-29AGAMOUS-like 61