PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0003800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 294aa    MW: 32895.5 Da    PI: 9.326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0003800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05130149120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Spipo28G0003800 130 FSCPVCYKVFNRYNNMQMHM 149
                      89*****************9 PP
2zf-C2H216.32.7e-05214236123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +Cgk F  k + ++H +++
  Spipo28G0003800 214 FTCRKCGKAFAVKGDWRTHEKNC 236
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-5123152No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5130149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.48130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-7195234No hitNo description
Gene3DG3DSA:3.30.160.604.6E-6210234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.891214234IPR007087Zinc finger, C2H2
SMARTSM0035538214234IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MWGPTRSMLS ERGKPIHLSP PSSPPLREAL PLLTLSPRRH HEETSSSSAA FGKKKDLEPV  60
IVALHIGLPS PSPANLISRV SSTTEVVDDD AEGADDGAST GFTETSISRV NKGQYWIPSP  120
SQILMGPTQF SCPVCYKVFN RYNNMQMHMW GHGSQYRRGP DSLKGAQPTA MLKLPCYCCA  180
PGCRNNIDHP RSKPLKDFRT LQTHYKRKHG VKPFTCRKCG KAFAVKGDWR THEKNCGKLW  240
YCKCGSDFKH KRSLKDHIRA FGNEHMAIGA DWFGEEEEAS SEIEHDCTLR RSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246927.11e-146PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-122ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1D1ZJL01e-155A0A1D1ZJL0_9ARAE; Protein TRANSPARENT TESTA 1
STRINGXP_010246927.11e-145(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]