PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo11G0042900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 15459.9 Da PI: 11.9139 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 18 | 61 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ie++ rqvtfskRr g++KKA EL+vLC+a++a ++fs+ gk Spipo11G0042900 18 KIESNDARQVTFSKRRSGLFKKAAELCVLCGAQAAAVVFSPGGK 61 69***************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.189 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-33 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-28 | 10 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-24 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MEAGRRGGKG RRKIEIRKIE SNDARQVTFS KRRSGLFKKA AELCVLCGAQ AAAVVFSPGG 60 KPFAFGHPSV DLLLDRFLRL PASAPPPPPL GGPVRRTTGS RRPPIDGLGA EELSHLHAAV 120 TELRRSLPPA RGGGGGATAA ASPPNLSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028767249.1 | 2e-31 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_028774275.1 | 2e-31 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1D1ZCM6 | 7e-42 | A0A1D1ZCM6_9ARAE; Agamous-like MADS-box protein AGL61 (Fragment) | ||||
STRING | Traes_3B_530CCA7AE.1 | 4e-33 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-24 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo11G0042900 |