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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0042400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HSF | ||||||||
Protein Properties | Length: 349aa MW: 39291.9 Da PI: 4.5789 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.4e-35 | 42 | 134 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+i+ed+e++ ++sws+ nsf+v+d++ fa+++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++ weF+++sF g+k+ll++ Spipo0G0042400 42 FLTKTYDIVEDPETDAVVSWSSGRNSFIVWDSHAFASTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANESFVGGQKHLLKT 127 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r++++ Spipo0G0042400 128 IRRRRNS 134 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.77E-33 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-59 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.8E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEEIGLSLKV EEVEEEEEVE ETAAALSPRP MGGLSEAGPP PFLTKTYDIV EDPETDAVVS 60 WSSGRNSFIV WDSHAFASTL LPKYFKHSNF SSFIRQLNTY GFRKVDPDRW EFANESFVGG 120 QKHLLKTIRR RRNSPHSAQQ QSGAGPCVEL GQFGLETEVE QLRRDRSILM MEIIKLRQQQ 180 ESSRAQLLSM EERLQGTERK QQQMMTFLAR AMKNPSFFQQ LVHHNEQRRH LDGVRRKRRL 240 PATPSSEDLP VLEASTAEPD VETLLTTVES EASTSNDPPA SETLFSLGSV NDVMWEEILR 300 EDMLSGKTAP AAEDRSEINF PVEDFPLAWG ESVNDLAEQM GYLGSSSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-26 | 37 | 134 | 12 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-26 | 33 | 131 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 33 | 131 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 33 | 131 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915288.1 | 1e-137 | heat shock factor protein HSF30 | ||||
Refseq | XP_010915289.1 | 1e-137 | heat shock factor protein HSF30 | ||||
Refseq | XP_019705194.1 | 1e-137 | heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-115 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A1U8A4J2 | 1e-135 | A0A1U8A4J2_NELNU; heat shock factor protein HSF30 | ||||
STRING | XP_010262066.1 | 1e-135 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-112 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0042400 |
Publications ? help Back to Top | |||
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