PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_212040_dcah.t1
Common NameSOVF_212040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 506aa    MW: 56242.4 Da    PI: 6.3885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_212040_dcah.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13347393455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h  +Er+RR+++N++f  Lr+l+P+ +      +l+Ka+ L  A+ YI++Lq
  Sp_212040_dcah.t1 347 SHVLAERQRREKLNQRFYALRSLVPNiS------RLDKASLLLDAISYINDLQ 393
                        7999**********************66......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4648230IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.244343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18346407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-14346396No hitNo description
SuperFamilySSF474591.83E-18346413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00838451504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGQNYVLKEE EKALVQAVVR KDAYSFLMST AYDDSLSEFN PPGDILNLQQ GLCQIVDGSS  60
WNYAIFWQIA SSKNGRAVLI WGDGHCRDPK AVLPREGLDC VGNGKLGKNE AKKRVLEKLH  120
ACFGGSEEDN FAATLDKVSD IEMLYLTSMY YWFRLDSSLG PAKSFTSGRP IWVSDVRSCL  180
DHYQSRAHLA KSAMFQTVVF VPVKTGVLEL GSVRTVMEQP SLVQMVKTVF GESHSFQSKV  240
TPKVFGRDLS LGGSRPRSMN ISFAGRMEDD ASFSAESHVA VNGLSLSPSN GKNTENSDKK  300
FCSEINFGGS NPESDEVSEE FLLHAAELRA RKRPVRRPAT GREDASSHVL AERQRREKLN  360
QRFYALRSLV PNISRLDKAS LLLDAISYIN DLQAKINVLE AEKEGANPNP NPNPNPNPNP  420
NSDQEELPIP EIDFQARQDD ALVHISFPLD DHPVSKVVRT LREHQLVALE ANVSTIDDKM  480
VHTFKIRAQS DGAESLKEKL EAALFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-21341403264Transcription factor MYC2
5gnj_B2e-21341403264Transcription factor MYC2
5gnj_E2e-21341403264Transcription factor MYC2
5gnj_F2e-21341403264Transcription factor MYC2
5gnj_G2e-21341403264Transcription factor MYC2
5gnj_I2e-21341403264Transcription factor MYC2
5gnj_M2e-21341403264Transcription factor MYC2
5gnj_N2e-21341403264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844286.10.0transcription factor bHLH3-like
TrEMBLA0A0K9Q7E40.0A0A0K9Q7E4_SPIOL; Uncharacterized protein
STRINGXP_010679204.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-141bHLH family protein